PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G437460_P01
Common NameARF12, pco123854
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ARF
Protein Properties Length: 708aa    MW: 77967.8 Da    PI: 7.1064
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G437460_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3764.1e-24147248199
                        EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                        f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F   +
  GRMZM2G437460_P01 147 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELVAKDLHGTEWKFRHIYRGQPRRHLLTTGWSAFVNRKKLISGDAVLFL--R 235
                        99****************************963.3445679************************************************..3 PP

                        SSEE..EEEEE-S CS
                 B3  87 rsefelvvkvfrk 99 
                         +++ l+++v+r+
  GRMZM2G437460_P01 236 GEDGVLRLGVRRA 248
                        4899899999986 PP

2Auxin_resp103.52.6e-34273353182
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                        +a+a++tk+vF+++YnPr ++seF+v+++k+ +++++++svGmR +m++e++d+serr++G+++g +++dp  W +SkW++L
  GRMZM2G437460_P01 273 VAQAVATKTVFHIYYNPRLTQSEFIVPYWKFTRSFNQPISVGMRCRMRYESDDASERRCTGIIIGSREADP-IWYGSKWKCL 353
                        6899*******************************************************************.8********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.29E-42141248IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.1E-40143256IPR015300DNA-binding pseudobarrel domain
CDDcd100171.61E-22145247No hitNo description
PROSITE profilePS5086313.225147249IPR003340B3 DNA binding domain
SMARTSM010195.1E-23147249IPR003340B3 DNA binding domain
PfamPF023626.7E-22147248IPR003340B3 DNA binding domain
PfamPF065071.3E-29273353IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MAGIDLNTVE EEDEEEAEAL PLPGPGGRGA VCLELWHACA GPVPPLPRKG SAVVYLPQGH  60
LEHIGGDAAR GAAASAVPPH VLCRVVDVTL HADGATDEVY ARVSLLPEDE DAEKRAQAQA  120
RVREDEDRRD GEDGGAMRPL ARTPHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYSQ  180
QRPSQELVAK DLHGTEWKFR HIYRGQPRRH LLTTGWSAFV NRKKLISGDA VLFLRGEDGV  240
LRLGVRRAAQ LKIVTPIPAP HNQCSSNSNL GNVAQAVATK TVFHIYYNPR LTQSEFIVPY  300
WKFTRSFNQP ISVGMRCRMR YESDDASERR CTGIIIGSRE ADPIWYGSKW KCLVVRWDDG  360
IECRWPNRVS PWEIELTGSV SGSQMCAPSS KRLKPCLPQV NPEIVLPNGS VSSDFAGSAR  420
FHKVLQGQEL LGFKTHDGPA ISASQATEAR NLQYSDERSN NNLGIPRLGV RSPTGIPGFP  480
YHCSGFGESQ RFQKVLQGQE VFHPFRGGCL ADGHIRTAGM YQPDGRHVSG AAYKWSAPQG  540
YDFPQPAKPV FLLQESSPSS VMMFPQTRSK ITHLEYEYSR HEDGRLDRTV PTQDMGRSNQ  600
TLSLWPHLVS GEAIEECTGT VNMHSPVSGA EHESNNESTV ENGCKIFGIS LAEKIRSCDE  660
ADSCSAKCNS RLQPLKSQMP KSLGSCWATV HEQRPVVGRV VDVSATDM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldx_A1e-1102538611363Auxin response factor 1
4ldx_B1e-1102538611363Auxin response factor 1
4ldy_A1e-1102538311361Auxin response factor 1
4ldy_B1e-1102538311361Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.122340.0aerial organ| aleurone| ear| embryo| endosperm| meristem| root| sheath| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G437460
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G437460_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0690050.0BT069005.1 Zea mays full-length cDNA clone ZM_BFb0119L19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001170123.10.0uncharacterized protein LOC100384045
SwissprotQ0JKI90.0ARFB_ORYSJ; Auxin response factor 2
TrEMBLC0PL360.0C0PL36_MAIZE; Auxin response factor
TrEMBLK0D9R50.0K0D9R5_MAIZE; Auxin response factor (Fragment)
STRINGGRMZM2G437460_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25373580
Representative plantOGRP66851018
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-155ARF family protein
Publications ? help Back to Top
  1. Khanday I,Yadav SR,Vijayraghavan U
    Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways.
    Plant Physiol., 2013. 161(4): p. 1970-83
    [PMID:23449645]