PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G435824_P01
Common NameLOC100285286, ZEAMMB73_908157
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 349aa    MW: 38554.4 Da    PI: 6.4156
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G435824_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.73.9e-52101391129
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                        +ppGfrFhPtdeel+ +yLkkkv  +k+el evi+evd++k+ePw+L++  ++ +  ++ewyfFs++d+ky+tg+r+nrat++g Wkatg+d
  GRMZM2G435824_P01  10 VPPGFRFHPTDEELLLYYLKKKVGFEKFEL-EVIREVDLNKIEPWELQEtcRIGSaPQNEWYFFSHKDRKYPTGSRTNRATTAGLWKATGRD 100
                        69***************************9.99**************953433332566********************************* PP

                NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                        k + + + +++g++ktLvfy+grap+g+ktdW+mheyrle
  GRMZM2G435824_P01 101 KCIRT-SYRKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 139
                        ****9.8999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.22E-585163IPR003441NAC domain
PROSITE profilePS5100557.42410163IPR003441NAC domain
PfamPF023654.6E-2711138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MAAFSSSNGV PPGFRFHPTD EELLLYYLKK KVGFEKFELE VIREVDLNKI EPWELQETCR  60
IGSAPQNEWY FFSHKDRKYP TGSRTNRATT AGLWKATGRD KCIRTSYRKI GMRKTLVFYR  120
GRAPHGQKTD WIMHEYRLED ADDDDAQGGT SEDGWVVCRV FKKKCFFKIG GGEGSTTSSQ  180
GADAGGHLAT MSPPLGGHHD LAYMHPHPYY HHAASYYSQM QAPGPHATAY SHHVQVQDLL  240
TNHRPTDDDG AGTGYDFSGL PVENQPGGGL DVGSSDGVAT DDGGQLAGER RDQTTGTAAD  300
HQWQAMDGFS NGGSAEVQQM TGAQRGGEMD LWGYGRLCGH AEETNKHKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-521016417166NO APICAL MERISTEM PROTEIN
1ut4_B6e-521016417166NO APICAL MERISTEM PROTEIN
1ut7_A6e-521016417166NO APICAL MERISTEM PROTEIN
1ut7_B6e-521016417166NO APICAL MERISTEM PROTEIN
4dul_A6e-521016417166NAC domain-containing protein 19
4dul_B6e-521016417166NAC domain-containing protein 19
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G435824
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detectable in lateral root development when they reach 10 mm long. {ECO:0000269|PubMed:20197506}.
UniprotTISSUE SPECIFICITY: Expressed throughout the root cap, in both columella (COL) and lateral root cap (LRC) cells, with higher levels in the COL-adjoining LRC than the upper LRC. Also present at low levels expression in the tips of cotyledons and the cotyledon vasculature, as weel as in vasculature of the first pair of true leaves and at the hydathodes. {ECO:0000269|PubMed:20197506}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G435824_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9715420.0EU971542.1 Zea mays clone 366845 NAC domain-containing protein 76 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151651.10.0uncharacterized protein 100285286
SwissprotQ9SV871e-105BRN2_ARATH; Protein BEARSKIN2
TrEMBLA0A1D6J7D70.0A0A1D6J7D7_MAIZE; Putative NAC domain transcription factor superfamily protein
STRINGGRMZM2G435824_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92973046
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.11e-86NAC domain containing protein 70
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]