PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G435475_P01 | ||||||||
Common Name | DOF10, LOC100275252 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | Dof | ||||||||
Protein Properties | Length: 231aa MW: 24175.2 Da PI: 10.2572 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 116.9 | 7.8e-37 | 72 | 129 | 3 | 60 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 e+ l+cprC s++tkfCy+nny+++qPr+fC+aC+ryWt+GGa+rnvPvG+grrkn+ GRMZM2G435475_P01 72 EARLPCPRCLSRDTKFCYFNNYNVNQPRHFCRACHRYWTAGGAIRNVPVGSGRRKNRP 129 56789**************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 2.5E-30 | 74 | 128 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.23 | 75 | 129 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 9.0E-24 | 76 | 128 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 77 | 113 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MLPPHVEMPT TRAAGIKLFG KVITTHYQQQ QQPPQPVRHA GAAPASSGRG SGGGPGPDLL 60 EEVARARAAA AEARLPCPRC LSRDTKFCYF NNYNVNQPRH FCRACHRYWT AGGAIRNVPV 120 GSGRRKNRPV LLPPPPPPPH AATATTTGSS ATISADDSND RRRSASGSPP PVFTSAFTAP 180 YYLGSPAQFA TSSPAYAAGA AGPPGTAGQC LWLVAATTTT DRSAATETAL F |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G435475 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G435475_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU955011 | 0.0 | EU955011.1 Zea mays clone 1501573 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001142858.1 | 1e-166 | uncharacterized protein LOC100275252 | ||||
TrEMBL | B6SQJ6 | 1e-165 | B6SQJ6_MAIZE; C2C2-DOF transcription factor | ||||
STRING | GRMZM2G435475_P01 | 1e-166 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6495 | 28 | 51 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29160.1 | 4e-31 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G435475_P01 |
Entrez Gene | 100275252 |
Publications ? help Back to Top | |||
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