PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G435357_P01
Common NameLOC103629983, LOC103638807, ZEAMMB73_168199, Zm.136076
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 398aa    MW: 43401.1 Da    PI: 7.8807
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G435357_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.7e-05189208120
                        EEETTTTEEESSHHHHHHHH CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                        ++Cp C k+F+r  n++ H+
  GRMZM2G435357_P01 189 FSCPVCYKTFNRYNNMQMHM 208
                        89*****************9 PP
2zf-C2H214.10.00014273295123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        + C +Cgk F  + + ++H +++
  GRMZM2G435357_P01 273 FMCRKCGKAFAVRGDWRTHEKNC 295
                        89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.62E-5185211No hitNo description
PROSITE profilePS501579.743189216IPR007087Zinc finger, C2H2
SMARTSM003550.45189211IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.1E-6189208IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280191211IPR007087Zinc finger, C2H2
SuperFamilySSF576671.12E-6257293No hitNo description
Gene3DG3DSA:3.30.160.601.7E-6259293IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549273293IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808273293IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MGDPYSNFLR GHYSHLPPSN APPATSFPSS YASSYYLHHP PPHSPPIREA LPLLSNLTPS  60
SATNHNHGGG DVRDHKDGNK RATSRSNQEE ADQAAAGEVT VALHIGLPSP GSGPSPSESA  120
ADGGDSQEPS AEGRSQQHQG VDHEAGEEEE AEEEDAMTVG CASIGIGRLT KGQYWIPTPS  180
QILIGPTQFS CPVCYKTFNR YNNMQMHMWG HGSQYRKGPE SLRGTQPTAM LRLPCYCCAA  240
GCRNNIDHPR ARPLKDFRTL QTHYRRKHGI KPFMCRKCGK AFAVRGDWRT HEKNCGKLWY  300
CACGSDFKHK RSLKDHIRAF GRGHAACGID CFDDLDDDDR DPSSEVDHAA TTNATSMTTT  360
AAAAAANAHR RHHSVWKPPP PPPPPLSSSS RGSGDRLL
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G435357
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269|PubMed:17600712}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G435357_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0389150.0BT038915.1 Zea mays full-length cDNA clone ZM_BFb0339K06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008659843.10.0zinc finger protein WIP2
SwissprotQ9SVY11e-127ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLK7UPT70.0K7UPT7_MAIZE; Zinc finger protein WIP2
STRINGGRMZM2G435357_P010.0(Zea mays)
STRINGGRMZM2G436344_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-116C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]