PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G435015_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 279aa    MW: 30963.9 Da    PI: 5.4411
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G435015_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.61.3e-0964107654
                        HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         ++ErrRR+r+N +++ L++++Pk +      K++  +iL  +++Y+k+L
  GRMZM2G435015_P01  64 LMAERRRRKRLNGRLSMLQSVVPKiN------KMDWTSILGDTIDYMKEL 107
                        589*********************77......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.93558107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.72E-1562132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-764107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-964113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-1365125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGFLDVVKPK VASAALVDDA AGLEACKVEP DLEESGVAFG AGAAPPPALA SKKKRVVGMS  60
SKNLMAERRR RKRLNGRLSM LQSVVPKINK MDWTSILGDT IDYMKELLER IKLLQEEIGQ  120
QQQEASGMLS VFYELNPNEM VARNTPRREM SYGGNLMLWN SKKSLDFHRS EPCFLAVARR  180
HSVMLLSALL GLYITQVVCL EGIHSCDQVL VCDLPCWFDW AFGPGESCVV ISSLNYHLGD  240
LHLNVEVLED IGILKIPFTQ LKEEELDGPA TAAAEREQM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15272KKRVVGMSSKNLMAERRRRKR
26673ERRRRKRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1370681e-167ear| embryo
Zm.791091e-167ear| endosperm| meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G435015
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G435015_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0239861e-164BT023986.1 Zea mays clone EL01N0413D04 mRNA sequence.
GenBankBT0429111e-164BT042911.1 Zea mays full-length cDNA clone ZM_BFc0062P05 mRNA, complete cds.
GenBankEU9635381e-164EU963538.1 Zea mays clone 263876 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001142220.18e-52uncharacterized LOC100274388
TrEMBLA0A1D6I8R31e-115A0A1D6I8R3_MAIZE; Uncharacterized protein
TrEMBLA0A1D6I8R41e-115A0A1D6I8R4_MAIZE; Uncharacterized protein
STRINGGRMZM2G435015_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Representative plantOGRP5571678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.16e-22beta HLH protein 93