PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G433591_P02
Common Nameknox7, ZEAMMB73_706511
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TALE
Protein Properties Length: 328aa    MW: 35578.1 Da    PI: 6.2378
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G433591_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.61.9e-072532862154
                        HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        k +yp+++++++L +++gL+ +q+ +WF N+R +
  GRMZM2G433591_P02 253 KWPYPTEDDKARLVQETGLQLKQINNWFINQRKR 286
                        569*****************************87 PP
2ELK284.9e-10207228122
                ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                        ELK++L+++Y+++L+++++E++
  GRMZM2G433591_P02 207 ELKNELKQGYKEKLVDIREEIM 228
                        9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.6E-193781IPR005540KNOX1
PfamPF037901.6E-164077IPR005540KNOX1
SMARTSM012566.2E-2696151IPR005541KNOX2
PfamPF037915.0E-16104150IPR005541KNOX2
PROSITE profilePS5121310.057207227IPR005539ELK domain
SMARTSM011886.3E-4207228IPR005539ELK domain
PfamPF037897.4E-7207228IPR005539ELK domain
PROSITE profilePS5007111.548227290IPR001356Homeobox domain
SuperFamilySSF466891.28E-15229292IPR009057Homeodomain-like
SMARTSM003892.8E-10229294IPR001356Homeobox domain
CDDcd000861.44E-11230291No hitNo description
Gene3DG3DSA:1.10.10.602.2E-24234291IPR009057Homeodomain-like
PfamPF059209.3E-18247286IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MSFHYHDHGL SMDAAAAAAA AAASSPPSGF SPGIGGEREK AAIAAHPLYE RLLEAHVACL  60
RVATPVDQLP RIDAQIAARP PPLAAAAGAA AAGAAAAGGP SGGEELDLFM THYVLLLCSF  120
KEQLQQHVRV HAMEAVMGCW ELEQSLQSLT GASPGEGTGG TMSDDEDNQV DSEANMFDGN  180
DGSDGMGFGP LILTEGERSL VERVRKELKN ELKQGYKEKL VDIREEIMRK RRAGKLPGDT  240
ASVLKAWWQA HSKWPYPTED DKARLVQETG LQLKQINNWF INQRKRNWHS NPTSSAEKTK  300
KKRAELAACF VAHICAELPP PSHWRAED
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1283302RKRNWHSNPTSSAEKTKKKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.957510.0meristem| ovary| pollen| root| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G433591
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Isoform 1 is expressed in roots, leaf blades, leaf sheaths and flowers. Isoform 2 is expressed in leaf blades, leaf sheaths and flowers. {ECO:0000269|PubMed:12034492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G433591_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9685240.0EU968524.1 Zea mays clone 321842 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105852.10.0KNOX family class 2 homeodomain protein isoform Knox7L
SwissprotQ0E3C31e-180KNOS2_ORYSJ; Homeobox protein knotted-1-like 2
TrEMBLQ2MCP30.0Q2MCP3_MAIZE; KNOX family class 2 homeodomain protein
STRINGGRMZM2G433591_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-142KNOTTED1-like homeobox gene 3