PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G431309_P01
Common NameGRAS75, Zm.36290
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 554aa    MW: 60835.6 Da    PI: 6.23
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G431309_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS436.12.7e-1331845531373
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                        l+elL++cA+av+ ++  +++ ++++l++++s +g+p++Rl ay++e+L arla s+s++ykal+++e +   ss+ l+++++++e++P++k
  GRMZM2G431309_P01 184 LKELLIACARAVERNNSYAIDLMITELRKMVSVSGEPLERLGAYMVEGLVARLAASGSSIYKALKCKEPR---SSDLLSYMHFLYEACPYFK 272
                        5799*****************************************************************9...9****************** PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182
                        f+++ aN aI ea++ge+r+HiiDf i qG+QW++LlqaLa+Rp+gpp +R+Tg++++ s   +   le +g+rL+++A   +vpf+f++ v
  GRMZM2G431309_P01 273 FGYMSANGAIAEAIKGEDRIHIIDFHIAQGAQWVSLLQALAARPGGPPFVRVTGIDDSVSAyaRGGGLELVGRRLTHIAGLYKVPFQFDA-V 363
                        *********************************************************888899999************************.6 PP

               GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                        a + +++e e+L v pgEa+aVn+ l+lh+++de+vs++++rd++L+lvk+lsPkv+++veqe+++n+++F++rf+e+l+yy+a+f+s++  
  GRMZM2G431309_P01 364 AISGSEVEEEHLGVVPGEAVAVNFTLELHHIPDETVSTANHRDRILRLVKGLSPKVLTLVEQESNTNTAPFAQRFAETLDYYTAIFESIDLA 455
                        889***************************************************************************************** PP

               GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                        lpr+++eri++E+++l+reivn+vaceg+er+erhe ++kW++rl++aGF+p pls  +++++k+ll+ ++ d y++ e++g l+lgWk+rp
  GRMZM2G431309_P01 456 LPRDDRERINIEQHCLAREIVNLVACEGEERVERHEVFGKWKARLMMAGFSPSPLSALVNATIKTLLQSYSPD-YKLAERDGVLYLGWKNRP 546
                        ***********************************************************************66.****************** PP

               GRAS 367 LvsvSaW 373
                        L++ SaW
  GRMZM2G431309_P01 547 LIVSSAW 553
                        ******* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.638158535IPR005202Transcription factor GRAS
PfamPF035149.2E-131184553IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MADTPTSRMV HPFGDAPRQT PKQFLYSGNP QHLCHPYQSA PDTHVVLQRR YTVRSQSHSP  60
NNAGSEDHET HKQYTLESSA ASGCSRHGSP SSQSVHAGSG SPVSHDDSHS GSTNGHGSPV  120
SASCVTGEDP TDLKQKLKDL EAVMLGTSET DPEIVNSLEI SAANQLSLEP EEWEHMVSMP  180
RGNLKELLIA CARAVERNNS YAIDLMITEL RKMVSVSGEP LERLGAYMVE GLVARLAASG  240
SSIYKALKCK EPRSSDLLSY MHFLYEACPY FKFGYMSANG AIAEAIKGED RIHIIDFHIA  300
QGAQWVSLLQ ALAARPGGPP FVRVTGIDDS VSAYARGGGL ELVGRRLTHI AGLYKVPFQF  360
DAVAISGSEV EEEHLGVVPG EAVAVNFTLE LHHIPDETVS TANHRDRILR LVKGLSPKVL  420
TLVEQESNTN TAPFAQRFAE TLDYYTAIFE SIDLALPRDD RERINIEQHC LAREIVNLVA  480
CEGEERVERH EVFGKWKARL MMAGFSPSPL SALVNATIKT LLQSYSPDYK LAERDGVLYL  540
GWKNRPLIVS SAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-651885548375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.362900.0cell culture| meristem| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G431309
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G431309_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0639280.0BT063928.1 Zea mays full-length cDNA clone ZM_BFc0120M18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147837.20.0uncharacterized protein LOC100281447
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLC0P6K90.0C0P6K9_MAIZE; GRAS transcription factor
STRINGGRMZM2G431309_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Representative plantOGRP14091447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]