PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G430849_P01 | ||||||||
Common Name | Zm.41722 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NAC | ||||||||
Protein Properties | Length: 395aa MW: 42079.8 Da PI: 7.3831 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.4 | 4e-51 | 21 | 148 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeel+ +yL++++++ ++++ +i++vdiyk++PwdLp+k+ ++ e+yfFs+rd+ky++g r+nra+ sgyWkatg+dk++ GRMZM2G430849_P01 21 LPPGFRFHPTDEELILHYLRNRAASAPCPV-PIIADVDIYKFDPWDLPAKALYGDGEYYFFSPRDRKYPNGIRPNRAAGSGYWKATGTDKPI 111 79****************************.88***************77777899************************************ PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +ge vg+kk Lvfykgr p+g+kt+W+mheyrl GRMZM2G430849_P01 112 HDAaTGEGVGVKKALVFYKGRPPRGSKTNWIMHEYRL 148 *9878889***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-63 | 8 | 185 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.675 | 21 | 185 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-26 | 22 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MTMAATTTMM SAAAQAATSQ LPPGFRFHPT DEELILHYLR NRAASAPCPV PIIADVDIYK 60 FDPWDLPAKA LYGDGEYYFF SPRDRKYPNG IRPNRAAGSG YWKATGTDKP IHDAATGEGV 120 GVKKALVFYK GRPPRGSKTN WIMHEYRLAA VAGCTSPLAA YRPPSKFRNV SMRLDDWVLC 180 RIYKKSGHAS PMVPPLADYE HLDRDGPSPG GFFDDYFCGS TSLYAAAAPA IGGGAAAAGT 240 TNTTTTPAVV MQQHQQPAAL PRLPKIPSIS ELLWDEYALA QILDPPADVA ADHASFAVHP 300 SLNQLLAVGD DGSDLMMFSP PPAAAAGGKR KAMVAMNMSP ADECAATAHQ HQSPAAKRLN 360 GGSCFDDAPQ PASGLPATMS SVLGGGLNHH MLPQF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-70 | 21 | 190 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-70 | 21 | 190 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-70 | 21 | 190 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-70 | 21 | 190 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-70 | 21 | 190 | 20 | 173 | NAC domain-containing protein 19 |
3swm_B | 8e-70 | 21 | 190 | 20 | 173 | NAC domain-containing protein 19 |
3swm_C | 8e-70 | 21 | 190 | 20 | 173 | NAC domain-containing protein 19 |
3swm_D | 8e-70 | 21 | 190 | 20 | 173 | NAC domain-containing protein 19 |
3swp_A | 8e-70 | 21 | 190 | 20 | 173 | NAC domain-containing protein 19 |
3swp_B | 8e-70 | 21 | 190 | 20 | 173 | NAC domain-containing protein 19 |
3swp_C | 8e-70 | 21 | 190 | 20 | 173 | NAC domain-containing protein 19 |
3swp_D | 8e-70 | 21 | 190 | 20 | 173 | NAC domain-containing protein 19 |
4dul_A | 8e-70 | 21 | 190 | 17 | 170 | NAC domain-containing protein 19 |
4dul_B | 8e-70 | 21 | 190 | 17 | 170 | NAC domain-containing protein 19 |
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Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G430849 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G430849_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT067914 | 0.0 | BT067914.2 Zea mays full-length cDNA clone ZM_BFc0188L19 mRNA, complete cds. | |||
GenBank | EU971399 | 0.0 | EU971399.1 Zea mays clone 363807 NAC domain transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001151613.1 | 0.0 | uncharacterized protein LOC100285247 | ||||
TrEMBL | A0A3L6E1P1 | 0.0 | A0A3L6E1P1_MAIZE; NAC transcription factor ONAC010 | ||||
STRING | GRMZM2G430849_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1237 | 36 | 123 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 4e-81 | NAC-like, activated by AP3/PI |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G430849_P01 |