PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G430522_P02
Common NameZm.4437
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 387aa    MW: 42641.9 Da    PI: 7.76
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G430522_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.54.5e-52812081128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdeelv++yL++kv +  +     i+evd++++ePw+Lp +++ +e+ewyfFs rd+ky+tg r+nrat +gyWkatgkd+ev
  GRMZM2G430522_P02  81 LPPGFRFHPTDEELVTFYLAAKVFNGACCG-IDIAEVDLNRCEPWELPDAARMGEREWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREV 171
                        79************************9777.56***************8888899************************************* PP

                NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        l++ +g+l g+kktLvfykgrap+gekt+Wv+heyrl
  GRMZM2G430522_P02 172 LNAaTGALLGMKKTLVFYKGRAPRGEKTKWVLHEYRL 208
                        *9878899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-6271231IPR003441NAC domain
PROSITE profilePS5100557.92881231IPR003441NAC domain
PfamPF023654.8E-2782208IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MVLWRTGGAW WCYLARAPHY KAPPHTIPQL RASSHHLIDL TTCLRSKPLC MHHHHQDQAM  60
GDALWDLLGE EMAAAGGEHG LPPGFRFHPT DEELVTFYLA AKVFNGACCG IDIAEVDLNR  120
CEPWELPDAA RMGEREWYFF SLRDRKYPTG LRTNRATGAG YWKATGKDRE VLNAATGALL  180
GMKKTLVFYK GRAPRGEKTK WVLHEYRLDG DFAAARRPCK EEWVICRILH KAGDQYSKLM  240
MVKSPYYLPM AMDPSSFCFQ EDPTGHPLPN PSGCTPFHHG HPHHSMQPPP PLPPSNHAGK  300
AVFTGAAAAC CMQQEPADGS NSAVLPMPPF PPFTPIVAGK PAAPAPPPQV VNAGPQEPPP  360
PTWLEAYLQH TGGILYEMGP TAAPRGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-478123117165NO APICAL MERISTEM PROTEIN
1ut4_B5e-478123117165NO APICAL MERISTEM PROTEIN
1ut7_A5e-478123117165NO APICAL MERISTEM PROTEIN
1ut7_B5e-478123117165NO APICAL MERISTEM PROTEIN
3swm_A5e-478123120168NAC domain-containing protein 19
3swm_B5e-478123120168NAC domain-containing protein 19
3swm_C5e-478123120168NAC domain-containing protein 19
3swm_D5e-478123120168NAC domain-containing protein 19
3swp_A5e-478123120168NAC domain-containing protein 19
3swp_B5e-478123120168NAC domain-containing protein 19
3swp_C5e-478123120168NAC domain-containing protein 19
3swp_D5e-478123120168NAC domain-containing protein 19
4dul_A5e-478123117165NAC domain-containing protein 19
4dul_B5e-478123117165NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.44370.0ear| meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G430522
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G430522_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0612700.0BT061270.1 Zea mays full-length cDNA clone ZM_BFb0128J16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008663651.10.0protein CUP-SHAPED COTYLEDON 1 isoform X2
TrEMBLA0A1D6KIZ60.0A0A1D6KIZ6_MAIZE; Protein CUP-SHAPED COTYLEDON 3
STRINGGRMZM2G430522_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.17e-86NAC family protein