PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G429378_P01 | ||||||||
Common Name | EREB175, ZEAMMB73_643574 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 315aa MW: 32986.8 Da PI: 4.7542 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.7 | 5.8e-18 | 99 | 149 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr+++ +gr++AeIrdp + r +lg+f+taeeAa++++ ++l+g GRMZM2G429378_P01 99 PRYRGVRRRP-WGRYAAEIRDPH----KgERLWLGTFDTAEEAARRYDSETRRLRG 149 68********.**********72....35*******************99888887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.1E-11 | 99 | 142 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.91E-29 | 99 | 159 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.7E-29 | 100 | 158 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.024 | 100 | 157 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-21 | 100 | 158 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.6E-32 | 100 | 163 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-10 | 101 | 112 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-10 | 123 | 139 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 315 aa Download sequence Send to blast |
MVEAAAVSRS RPKIKQEPAE TTAICKLVRV FCDDRDSTDS SGDEAAAGGG AGAAAGARKF 60 LVEISVEKHQ PRCNAMAPAG RAAGGGKRKA AAAGTPAEPR YRGVRRRPWG RYAAEIRDPH 120 KGERLWLGTF DTAEEAARRY DSETRRLRGP SAITNFPATP DDRVPLPAPA LSLHGVAAVG 180 EHSSAEEESC DESQLVVGSP VSVLRAMPDE TARATLPPKI ADAAAGCATK KDAPDGRGGL 240 SPFSADDALL PQLGEDAFSF GGVPFDDDLP TPQLGLDYLA ADPALDLGSL PMWPGVDGCR 300 FSDIGDDDLF SLPAL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-21 | 94 | 157 | 7 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Zm.125952 | 0.0 | endosperm |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G429378 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G429378_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ727679 | 0.0 | KJ727679.1 Zea mays clone pUT5607 AP2-EREBP transcription factor (EREB175) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008659266.1 | 0.0 | ethylene-responsive transcription factor ERF018 | ||||
TrEMBL | A0A3L6D8M1 | 0.0 | A0A3L6D8M1_MAIZE; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | K7V6M6 | 0.0 | K7V6M6_MAIZE; AP2-EREBP transcription factor | ||||
STRING | GRMZM2G429378_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13133 | 23 | 32 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G50640.1 | 3e-15 | ethylene responsive element binding factor 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G429378_P01 |
Entrez Gene | 103638043 |