PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G428555_P04
Common NameZm.28395
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 337aa    MW: 35913.4 Da    PI: 10.4257
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G428555_P04genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-1683125246
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +++ eE+e+l  a++ +G++ W+ Iar ++ gRt++ +k++w+ 
  GRMZM2G428555_P04  83 RPFSDEEEERLMAAHRFYGNK-WAMIARLFP-GRTDNAVKNHWHV 125
                        68*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.7E-96489IPR009057Homeodomain-like
SuperFamilySSF466891.03E-2164135IPR009057Homeodomain-like
PROSITE profilePS5129424.9177131IPR017930Myb domain
SMARTSM007174.9E-1381129IPR001005SANT/Myb domain
PfamPF002497.3E-1382124IPR001005SANT/Myb domain
CDDcd001676.90E-1184124No hitNo description
Gene3DG3DSA:1.10.10.609.4E-1790125IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MPPTSRRAAA AASPGSRRAA TGAQRRTPSS VSSSRCTGPR TGTSSPRSWT ADPVRASIII  60
ILHCGKSCRL RWFNQLDPRI SKRPFSDEEE ERLMAAHRFY GNKWAMIARL FPGRTDNAVK  120
NHWHVIMARK YREQSTAYRR RKLNQAVQRK LEAASAAVAM PPGAGAGDVA VGQHHHLLAA  180
AAAAHAHDAA YSFAADPYGF GIRHQYCTFP FPPGAASAED PPPPTQIHPF CLFPGPSSAA  240
AHADSRRLPW PPSSDAPGVA RYGEPHQLLQ LPVQSGWIDG VGVAAAGHHE PPFVLGNNGG  300
AAAFEGTTRQ QGSGAHFEAA AAPPPPAFID FLGVGAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-216513042107B-MYB
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G428555
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G428555_P04
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0419830.0BT041983.1 Zea mays full-length cDNA clone ZM_BFb0095C08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001354272.10.0uncharacterized protein LOC100273887
TrEMBLA0A1D6KP300.0A0A1D6KP30_MAIZE; Myb domain protein 105
TrEMBLA0A317Y6G80.0A0A317Y6G8_MAIZE; Transcription factor MYB105
STRINGGRMZM2G428555_P030.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26780.14e-46myb domain protein 117