PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G428555_P02
Common NameZm.28395
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 283aa    MW: 30406.2 Da    PI: 8.5904
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G428555_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.6e-172971246
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                        +++ eE+e+l  a++ +G++ W+ Iar ++ gRt++ +k++w+ 
  GRMZM2G428555_P02 29 RPFSDEEEERLMAAHRFYGNK-WAMIARLFP-GRTDNAVKNHWHV 71
                       68*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-81135IPR009057Homeodomain-like
SuperFamilySSF466891.11E-211181IPR009057Homeodomain-like
PROSITE profilePS5129424.912377IPR017930Myb domain
SMARTSM007174.9E-132775IPR001005SANT/Myb domain
PfamPF002495.6E-132870IPR001005SANT/Myb domain
CDDcd001674.01E-113070No hitNo description
Gene3DG3DSA:1.10.10.607.2E-173671IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0009089anatomyendosperm
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MAYYCNACCA GKSCRLRWFN QLDPRISKRP FSDEEEERLM AAHRFYGNKW AMIARLFPGR  60
TDNAVKNHWH VIMARKYREQ STAYRRRKLN QAVQRKLEAA SAAVAMPPGA GAGDVAVGQH  120
HHLLAAAAAA HAHDAAYSFA ADPYGFGIRH QYCTFPFPPG AASAEDPPPP TQIHPFCLFP  180
GPSSAAAHAD SRRLPWPPSS DAPGVARYGE PHQLLQLPVQ SGWIDGVGVA AAGHHEPPFV  240
LGNNGGAAAF EGTTRQQGSG AHFEAAAAPP PPAFIDFLGV GAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-20117642107B-MYB
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G428555
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G428555_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0419830.0BT041983.1 Zea mays full-length cDNA clone ZM_BFb0095C08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001354272.10.0uncharacterized protein LOC100273887
TrEMBLA0A1D6KP300.0A0A1D6KP30_MAIZE; Myb domain protein 105
TrEMBLA0A317Y6G80.0A0A317Y6G8_MAIZE; Transcription factor MYB105
STRINGGRMZM2G428555_P030.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26780.18e-47myb domain protein 117