PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G428555_P01
Common NameZm.28395
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 305aa    MW: 33025.2 Da    PI: 10.1965
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G428555_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.4e-1675120147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rg W + Ed +l ++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  GRMZM2G428555_P01  75 RGHWRPAEDAKLRELVALYGPQNWNLIAEKLD-GRSGKSCRLRWFNQ 120
                        899*****************************.***********996 PP
2Myb_DNA-binding52.61.1e-16128170246
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +++ eE+e+l  a++ +G++ W+ Iar ++ gRt++ +k++w+ 
  GRMZM2G428555_P01 128 RPFSDEEEERLMAAHRFYGNK-WAMIARLFP-GRTDNAVKNHWHV 170
                        68*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.7870121IPR017930Myb domain
SMARTSM007176.1E-1474123IPR001005SANT/Myb domain
SuperFamilySSF466898.2E-2875168IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.6E-2676128IPR009057Homeodomain-like
CDDcd001672.16E-1378119No hitNo description
PfamPF139216.7E-1678138No hitNo description
PROSITE profilePS5129424.91122176IPR017930Myb domain
SMARTSM007174.9E-13126174IPR001005SANT/Myb domain
CDDcd001675.57E-11129169No hitNo description
Gene3DG3DSA:1.10.10.603.4E-20129175IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MPCSSPAPTW LLRVSPAAAA ADQAAASSSC SSKGGGRVLT AGTTTMDTAA TAAAGGNAAD  60
LQESSSSGQS RLAARGHWRP AEDAKLRELV ALYGPQNWNL IAEKLDGRSG KSCRLRWFNQ  120
LDPRISKRPF SDEEEERLMA AHRFYGNKWA MIARLFPGRT DNAVKNHWHV IMARKYREQS  180
TAYRRRKLNQ AVQRKLEAAS AAVAMPPGAG AGDVAVGQHH HLLAAAAAAH AHDAAYSFAA  240
DPYGFGIRHQ YCTFPFPPGA ASAEDPPPPT QIHPFCLFPG EHSGNPYPAR HYLLARHRTR  300
TPRMG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-32741756107B-MYB
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G428555
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G428555_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0419830.0BT041983.1 Zea mays full-length cDNA clone ZM_BFb0095C08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001354272.10.0uncharacterized protein LOC100273887
TrEMBLA0A1D6KP300.0A0A1D6KP30_MAIZE; Myb domain protein 105
TrEMBLA0A317Y6G80.0A0A317Y6G8_MAIZE; Transcription factor MYB105
STRINGGRMZM2G428555_P030.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-71myb domain protein 105