PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G427438_P01
Common NameLOC103634527, Zm.129667
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 397aa    MW: 42666.9 Da    PI: 6.837
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G427438_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH283.7e-09327351227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        kte C+ + r G C+y +rC+FaHg+
  GRMZM2G427438_P01 327 KTEMCNKWER-GVCPYDGRCRFAHGM 351
                        8*********.*************95 PP
2zf-CCCH19.12.4e-06363388126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        ykt +C+ fa+   C+yG rC+F H+
  GRMZM2G427438_P01 363 YKTLPCQLFAAPSGCPYGHRCHFRHS 388
                        9**********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.106.5E-15322357IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-8325356IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.751325352IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4325351IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-5327351IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-9358388IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-7359389IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.296362390IPR000571Zinc finger, CCCH-type
SMARTSM003560.0041362389IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MEGELPFLSP PRPSRVSFDG RYGFGSPTWV SQLGTLRDSP SLCVSDGCDG GNGRSCFGSP  60
TWGSPLETLF NAPSSLVSDS RGAGNGPILS TPTSPLETLL NSTSSCVSDS RGSGSVFGTP  120
KMALPLETLL DSPSSPISDI RGGGNGSGLS TTKQASPLVP LLNSLSDSRG CGNNSSPRTS  180
KEQDSEMVQK AETLLRAITE RYDDCFLRLR YTTAELADLR LERARLGAEN LHLSLLLEEL  240
DAAEQSKQAS AVALTPLPNP AQAEAASTPK SISIRSKDFL SKKQPQGVAT PHRLRVRPSP  300
AMEDAAENKD GGEVEVEVEA FRQGAVKTEM CNKWERGVCP YDGRCRFAHG MEELRPVIRH  360
PRYKTLPCQL FAAPSGCPYG HRCHFRHSMA PTAAESW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A3e-16327388567Butyrate response factor 2
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G427438
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G427438_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1186682e-69AC118668.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0036G02, from chromosome 3, complete sequence.
GenBankAC1372672e-69AC137267.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G21, from chromosome 3, complete sequence.
GenBankAP0149592e-69AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126112e-69CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008654693.10.0putative zinc finger CCCH domain-containing protein 21
SwissprotQ10MN81e-110C3H21_ORYSJ; Putative zinc finger CCCH domain-containing protein 21
TrEMBLA0A1D6K0220.0A0A1D6K022_MAIZE; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A317YAC60.0A0A317YAC6_MAIZE; Putative zinc finger CCCH domain-containing protein 21
STRINGGRMZM2G427438_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121433235
Representative plantOGRP20581636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.12e-33C3H family protein