PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G426140_P01

Common Name

Zm.106446

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

HB-other

Protein Properties

Length: 793aa MW: 89567.6 Da PI: 5.0725

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G426140_P01	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	31.6	2.7e-10	311	355	9	53
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 + ++ L+e+Fek++yp ++++ LA++lgLt +q++ WF R+ GRMZM2G426140_P01 311 PIVTQKLKEHFEKDPYPCHATKDGLAQELGLTFNQISKWFSATRY 355 556899**********************************98886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54001	1.88E-5	9	123	No hit	No description
PROSITE profile	PS50071	11.904	300	360	IPR001356	Homeobox domain
SMART	SM00389	1.8E-9	302	364	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.98E-11	305	360	IPR009057	Homeodomain-like
CDD	cd00086	2.64E-11	306	358	No hit	No description
Pfam	PF00046	6.8E-8	310	355	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.9E-11	314	360	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	335	358	IPR017970	Homeobox, conserved site
SuperFamily	SSF57850	6.67E-13	495	542	No hit	No description
Gene3D	G3DSA:3.30.40.10	1.2E-12	504	542	IPR013083	Zinc finger, RING/FYVE/PHD-type
CDD	cd00162	4.61E-8	508	545	No hit	No description
Pfam	PF17123	8.1E-10	508	536	IPR001841	Zinc finger, RING-type
PROSITE profile	PS50089	9.067	509	539	IPR001841	Zinc finger, RING-type
SMART	SM00184	0.0011	509	591	IPR001841	Zinc finger, RING-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 793 aa Download sequence Send to blast
MLAKLLECWP DMEYDVSDCK QILLPFSFMG HFTLYVLNMD TRSIYIMDSM PIPSWFKGDH 60 PSMHYIHNIH YIANNMNAAM ELANPTWKDD IYMWRRIVPT WVPRTLNWDL SGFLVINFMH 120 DWNGIRLPCI CTTGATKVEE IHSKNHPVSL LVIEHSPFLA AKAKQGVPCL LLLCYKPTSS 180 AKFCNLQNIQ LFSNLYIPVF SSIVLQNESY EQESSDSSDE EWSTLSTPRK TKLQGNEKVS 240 LTESVRSAKR CSRRAPAREQ NNEHTQSEQL HGSASEQQAR EQLHGSVSKQ QTEVLRSNVS 300 SSDASKCHFG PIVTQKLKEH FEKDPYPCHA TKDGLAQELG LTFNQISKWF SATRYYSRVA 360 VAKNQKYTGE NTTENNSSAI FDGIQVIEPN FGLIDKPDAD TNDMISEKLM VQINLNEGIE 420 EDIPPSQYAT RCEEKLTMTQ AAISREVGPP GYDPGENFLQ VLDEIHRQPA SLSLSMVSVQ 480 APESVVDSLP CKSYKKLETP QCSDDMEQCH ICLTEYEDGD QIRTLPCKHE FHLQCVDKWL 540 KEIHRYLSIL GVPSVPWRRL RSRLVKTLAL HPSVAAPVDR APPPGASCSV VEAGSKDAEP 600 NLPILEDKDG LILEMDDFEL PLVWNFKYSM TVYLFAKEEL NCNLTAVKEN LMKPVTVSFK 660 EGLGQKFRQP SGTGIDFSVF EESDLLKQGD MDVYPLAVKA ETALPVDQPP EGDDQKMKTP 720 NSQITQAVFE KKENGDYHVR VVCQILWVNG TRYELQEIYG IGNSVEGDAD ANDPGKECVI 780 CLSETKGYYC PPM

Sequence ? help Back to Top

Protein Sequence Length: 793 aa Download sequence Send to blast

MLAKLLECWP DMEYDVSDCK QILLPFSFMG HFTLYVLNMD TRSIYIMDSM PIPSWFKGDH  60
PSMHYIHNIH YIANNMNAAM ELANPTWKDD IYMWRRIVPT WVPRTLNWDL SGFLVINFMH  120
DWNGIRLPCI CTTGATKVEE IHSKNHPVSL LVIEHSPFLA AKAKQGVPCL LLLCYKPTSS  180
AKFCNLQNIQ LFSNLYIPVF SSIVLQNESY EQESSDSSDE EWSTLSTPRK TKLQGNEKVS  240
LTESVRSAKR CSRRAPAREQ NNEHTQSEQL HGSASEQQAR EQLHGSVSKQ QTEVLRSNVS  300
SSDASKCHFG PIVTQKLKEH FEKDPYPCHA TKDGLAQELG LTFNQISKWF SATRYYSRVA  360
VAKNQKYTGE NTTENNSSAI FDGIQVIEPN FGLIDKPDAD TNDMISEKLM VQINLNEGIE  420
EDIPPSQYAT RCEEKLTMTQ AAISREVGPP GYDPGENFLQ VLDEIHRQPA SLSLSMVSVQ  480
APESVVDSLP CKSYKKLETP QCSDDMEQCH ICLTEYEDGD QIRTLPCKHE FHLQCVDKWL  540
KEIHRYLSIL GVPSVPWRRL RSRLVKTLAL HPSVAAPVDR APPPGASCSV VEAGSKDAEP  600
NLPILEDKDG LILEMDDFEL PLVWNFKYSM TVYLFAKEEL NCNLTAVKEN LMKPVTVSFK  660
EGLGQKFRQP SGTGIDFSVF EESDLLKQGD MDVYPLAVKA ETALPVDQPP EGDDQKMKTP  720
NSQITQAVFE KKENGDYHVR VVCQILWVNG TRYELQEIYG IGNSVEGDAD ANDPGKECVI  780
CLSETKGYYC PPM

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.114	0.0	cell culture\| embryo\| meristem\| ovary\| shoot\| tassel

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G426140

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G426140_P01

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	X89761	0.0	X89761.1 Z.mays mRNA for homeobox 2b protein.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A3L6FD64	0.0	A0A3L6FD64_MAIZE; Putative E3 ubiquitin-protein ligase LOG2
STRING	GRMZM2G426140_P01	0.0	(Zea mays)

Link Out ? help Back to Top
Phytozome	GRMZM2G426140_P01