PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G425798_P02
Common NameLOC100275603, ZEAMMB73_039079
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 422aa    MW: 45347.6 Da    PI: 10.0988
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G425798_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-20192241255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa a+++a+++++g
  GRMZM2G425798_P02 192 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEDAAIAYDEAALRFKG 241
                        7********.**********94....45***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.3E-33191250IPR001471AP2/ERF domain
SMARTSM003804.8E-38192255IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-22192250IPR016177DNA-binding domain
PfamPF008472.1E-13192241IPR001471AP2/ERF domain
PROSITE profilePS5103224.711192249IPR001471AP2/ERF domain
CDDcd000186.06E-31192250No hitNo description
PRINTSPR003672.2E-11193204IPR001471AP2/ERF domain
PRINTSPR003672.2E-11215231IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MERVKYCDCT VCSVQRSLCS TRRRRRRRRQ IDRQLTKVDP RRRHGKRPLP AAEVEEEEEE  60
EALPPGPPPA KHEQLEEPHH AAVSQLQGAT FSGGGGSSSS SVIGGPSPPQ AYAQYYYSAR  120
ADNDASAVAS ALAHVIRASP DQLPPQQAPA LYGAGVPGSL RLGDHPQASA HHYPGPGGHV  180
AAAEEEQGRR RHYRGVRQRP WGKWAAEIRD PKKAARVWLG TFDTAEDAAI AYDEAALRFK  240
GTKAKLNFPE RVQGRTDLGF LVTRGIPDHR HPSAAVTLAA MPPPHHQHGH QTVVPYPDLM  300
QYAQLLQGGR GGGGHAEAAV QQAHRQQQQQ QLMTMMGGRP GVNLPSTFSP SSSASAPQIL  360
DFSTQQLIRP GPPSPSPPRA AAMPSSSAAA APSTPSSTTT ASSPSGGAWP YGGERHRNKK  420
DA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-26191253467ATERF1
3gcc_A4e-26191253467ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12128RRRRRRRR
22228RRRRRRR
3307313GGRGGGG
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G425798
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G425798_P02
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9570620.0EU957062.1 Zea mays clone 1581709 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008669488.11e-131uncharacterized protein LOC103646542
TrEMBLA0A3L6PS871e-130A0A3L6PS87_PANMI; AT-rich interactive domain-containing protein 1A-like isoform X1
STRINGGRMZM2G425798_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44473571
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.18e-23related to AP2 6l