PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G425430_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 304aa    MW: 34030.3 Da    PI: 7.4421
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G425430_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.52e-31118174259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        dDgynWrKYGqK vkg e+prsYY+Ct+++C vkkkversa ++++++i+Y+g+Hnh+
  GRMZM2G425430_P01 118 DDGYNWRKYGQKAVKGGEYPRSYYKCTHTSCAVKKKVERSA-EGHITQIIYRGQHNHQ 174
                        8****************************************.***************8 PP
2WRKY23.31.3e-07286301116
                        ---SS-EEEEEEE--T CS
               WRKY   1 ldDgynWrKYGqKevk 16 
                        ldDgy+WrKYGqK+++
  GRMZM2G425430_P01 286 LDDGYRWRKYGQKVIN 301
                        59***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-27114176IPR003657WRKY domain
SuperFamilySSF1182907.85E-25116176IPR003657WRKY domain
SMARTSM007741.9E-32117175IPR003657WRKY domain
PfamPF031061.4E-23118174IPR003657WRKY domain
PROSITE profilePS5081123.089118176IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.5E-9273302IPR003657WRKY domain
SuperFamilySSF1182901.83E-6278301IPR003657WRKY domain
PROSITE profilePS5081110.98281304IPR003657WRKY domain
PfamPF031062.6E-4287302IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MRYYIYEKNM LMLWIMSGIK IFLQASFEMS HQQALAQVTA QAVHSQYNMI NHADYTISFS  60
STTTPALVTA QHANFSGNLT SAQEKPALPS HTGNSNIESN EVSQGLKTSA PTFDKPADDG  120
YNWRKYGQKA VKGGEYPRSY YKCTHTSCAV KKKVERSAEG HITQIIYRGQ HNHQRPPKRR  180
SKDGGGQLNE ADDFHENEDT STRSEPGSQD HSGKHEGSND GIPGPSVSRR GEVYEQLSGS  240
SDSEEERDDE QRAGNGCPGY TNANRRHVPT PAQRIIVQTN SEVDLLDDGY RWRKYGQKVI  300
NTQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-171181761877Probable WRKY transcription factor 4
2lex_A3e-171181761877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174179RPPKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.160680.0ear| endosperm| meristem| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G425430
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G425430_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9577240.0EU957724.1 Zea mays clone 1612894 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008657198.20.0probable WRKY transcription factor 4
TrEMBLC5WVP70.0C5WVP7_SORBI; Uncharacterized protein
STRINGGRMZM2G425430_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-46WRKY DNA-binding protein 3