PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G425366_P01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | GRAS | ||||||||
Protein Properties | Length: 541aa MW: 60489.3 Da PI: 5.2866 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 69.9 | 4.9e-22 | 219 | 341 | 2 | 124 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 ++lL+ cA+av+++d ++a++lL++++++as++gd++qRla++f+++L+arl++++s+l + +s+ +++e l+a++l+ ++ + GRMZM2G425366_P01 219 RSLLILCAHAVAANDGARARELLKQINQHASETGDATQRLAQCFARGLEARLLGTGSQLWQLQLASDR--LSTAEFLKAHNLYMAACGFNMA 308 789***************************************************99999864433333..35999************99888 PP GRAS 94 shltaNqaIleavege..ervHiiDfdisqGlQ 124 +I++a++ + + +Hi+D+++ G+Q GRMZM2G425366_P01 309 VIGFSTMTIMQAMAMAgrRSLHIVDYGMRFGFQ 341 888888888887665544999**********99 PP | |||||||
2 | GRAS | 134.3 | 1.4e-41 | 342 | 532 | 184 | 373 |
GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273 k++e + e+L+ +p+E+l+Vn +++ +l+desv ++ +rd+vL v++++P+v++ + + + n+ s+l rf eal yy+a+fd ++a GRMZM2G425366_P01 342 KKWELVCNEDLDRRPDEVLVVNDHFNFSTLMDESVFFDNpsPRDTVLLNVRKMRPDVFIQSILN-NSNGCSYLSRFREALFYYTAMFDIFDA 432 578888999*************************98877779***************9877655.66999********************** PP GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365 ++pres+ r+++E+ l+gr++ nvvaceg + er e++++W++r ++aG++++pl+ ++++ k +r ++ + + + e+ ++l++gW++r GRMZM2G425366_P01 433 TMPRESRSRVVLEQGLFGRSALNVVACEGIDLLERPERYRQWQARNQRAGLRQLPLQPTIVSILKEEVRSCHHRDFLICEDGKWLLQGWMGR 524 ************************************************************************999***************** PP GRAS 366 pLvsvSaW 373 L++ S W GRMZM2G425366_P01 525 ILFAQSTW 532 ******** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 14.874 | 192 | 344 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.7E-19 | 219 | 341 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.7E-39 | 342 | 532 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 18.155 | 350 | 513 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 541 aa Download sequence Send to blast |
MATSPEQFFV KDVSSTQQGG GCHHHAVPSD EDMMLPYISR MLMEDDDDAA DDNKLSHHPA 60 LLQVEEPFAQ ILSSPSLGGI SEDVLQGGGS DGRTPDYSSS SRSRCASAAG AFLELEDDVL 120 PGDDSGFMVG RESSVLSKKR YASRDDGSLE EEVVTRRSKA DKDTCAHDML EDMMLSGHET 180 YIRDMEKLRI AMANEKSRSN GKGGGGSKKA SFCNVVDIRS LLILCAHAVA ANDGARAREL 240 LKQINQHASE TGDATQRLAQ CFARGLEARL LGTGSQLWQL QLASDRLSTA EFLKAHNLYM 300 AACGFNMAVI GFSTMTIMQA MAMAGRRSLH IVDYGMRFGF QKKWELVCNE DLDRRPDEVL 360 VVNDHFNFST LMDESVFFDN PSPRDTVLLN VRKMRPDVFI QSILNNSNGC SYLSRFREAL 420 FYYTAMFDIF DATMPRESRS RVVLEQGLFG RSALNVVACE GIDLLERPER YRQWQARNQR 480 AGLRQLPLQP TIVSILKEEV RSCHHRDFLI CEDGKWLLQG WMGRILFAQS TWVAEDSSYS 540 E |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G425366 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G425366_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020404771.1 | 0.0 | scarecrow-like protein 9 | ||||
TrEMBL | A0A1D6F535 | 0.0 | A0A1D6F535_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G425366_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 | Representative plant | OGRP19814 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 2e-80 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G425366_P01 |