PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G424261_P01 | ||||||||
Common Name | ZEAMMB73_459327 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | TCP | ||||||||
Protein Properties | Length: 162aa MW: 17274.4 Da PI: 6.0784 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 36.6 | 1.5e-11 | 100 | 137 | 36 | 66 |
TCP 36 qdeLGfdkdsktieWLlqqakpaikeltgt.......s 66 qd+LGfdk+skt++WLl q+kp i+ l++ + GRMZM2G424261_P01 100 QDRLGFDKASKTLNWLLAQSKPPIDCLVDAadqvavvT 137 9************************9999844444430 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.1E-8 | 100 | 132 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 8.52 | 100 | 126 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MPPHLRHAFS AEGVGAGASS PYSSDISLDT DQRSTSTRVF HSIHAPSFSL SSDVPFVFAA 60 FALFFLPNLL PLPTVAAASR PTLVNADVYV FVVSFSDNEQ DRLGFDKASK TLNWLLAQSK 120 PPIDCLVDAA DQVAVVTGGR PTLVKGREQG SNSSTCCLTD SR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.39804 | 1e-81 | tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G424261 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G424261_P01 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU961498 | 2e-79 | EU961498.1 Zea mays clone 235951 teosinte branched1 protein mRNA, complete cds. | |||
GenBank | KJ727762 | 2e-79 | KJ727762.1 Zea mays clone pUT5707 TCP transcription factor (TCP11) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1D6J6B6 | 2e-99 | A0A1D6J6B6_MAIZE; Chaperone protein dnaJ 6 | ||||
STRING | GRMZM2G424261_P01 | 1e-114 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4052 | 31 | 72 | Representative plant | OGRP180 | 15 | 163 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G424261_P01 |