PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G423833_P01
Common NameLOC100383604
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 517aa    MW: 58091.8 Da    PI: 4.8758
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G423833_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.2e-1766113148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        +g+W++eEd++l+d+v+ +G g+W+++ +   ++R++k+c++rw ++l
  GRMZM2G423833_P01  66 KGPWSPEEDKRLKDYVEVHGAGNWNKVQKNAMLNRCGKSCRLRWTNHL 113
                        79*******************************************996 PP
2Myb_DNA-binding414.3e-13119162146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        ++++ +eE+e+++++  ++G++ W+  a++++ gRt++++k++w++
  GRMZM2G423833_P01 119 KDPFDAEEEEKIIKLYIRWGPK-WSMMASYLP-GRTDNEIKNFWNT 162
                        67899***************99.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.31261117IPR017930Myb domain
SuperFamilySSF466892.62E-3063160IPR009057Homeodomain-like
SMARTSM007171.9E-1465115IPR001005SANT/Myb domain
PfamPF002494.1E-1666113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2467120IPR009057Homeodomain-like
CDDcd001679.60E-1368113No hitNo description
SMARTSM007171.1E-12118166IPR001005SANT/Myb domain
PROSITE profilePS5129416.248118168IPR017930Myb domain
PfamPF002491.2E-10119162IPR001005SANT/Myb domain
CDDcd001673.13E-9121164No hitNo description
Gene3DG3DSA:1.10.10.608.7E-21121167IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MTQLPSKFKN KMMVVRVDEN PAPDGENSPL DDEYVSADDE HVDNEDKETD SIGDYENPSG  60
APQLKKGPWS PEEDKRLKDY VEVHGAGNWN KVQKNAMLNR CGKSCRLRWT NHLRPDLKKD  120
PFDAEEEEKI IKLYIRWGPK WSMMASYLPG RTDNEIKNFW NTRKRRKQRC GSPLHPEYML  180
SQLSHKDMDC ETPGESHGKK RSNECSKEKV VDVQELVDEL IVFEHLDYGK DTVFPTRPLK  240
CHASTSSVQI PGAIEKTFCP TDLNYVMTKN QSVHVGSAIG SGYPVYGGRL STSGTIFGSI  300
QTEIPSIQSS SYSPSNDWLA QCPSACIEQR IPMECNTISQ SKAYLMMHSS SAFCAPEHEA  360
CSETQAPDLC SGSDAVFDPS QCYPVASFSD LGISDTLLTK GLLNDIALAS LLNVNLKDQS  420
HINRQEPTND TSLGGASFLN ANLKDQSHLN WQEHMNETSP VAGLLNANLE EQSHLNWQEP  480
KNESSPEAGF LNANLEEQSH LNWPLQECEP WIERQMF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-24621673158MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-24621673158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162168RKRRKQR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.808010.0shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G423833
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G423833_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0677570.0BT067757.1 Zea mays full-length cDNA clone ZM_BFc0153H03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001169723.10.0uncharacterized LOC100383604
RefseqXP_008648126.10.0putative MYB DNA-binding domain superfamily protein isoform X1
TrEMBLA0A3L6EB840.0A0A3L6EB84_MAIZE; Transcription factor GAMYB
TrEMBLC0PHI80.0C0PHI8_MAIZE; Uncharacterized protein
TrEMBLK4JC920.0K4JC92_MAIZE; MYB-type transcription factor (Fragment)
STRINGGRMZM2G423833_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129022331
Representative plantOGRP1067739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.16e-48myb domain protein 33