PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G422644_P02
Common Nameumc2762
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family DBB
Protein Properties Length: 156aa    MW: 17737.9 Da    PI: 8.982
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G422644_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.36.6e-08333434
           zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                       ++C+ +e+ ++ lfC  ++  lC+ C ++ H
  GRMZM2G422644_P02  3 TICDVCESAPAVLFCAADEAALCRPCDEKVH 33
                       69**************************998 PP
2zf-B_box27.66e-095291237
           zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                       +  +C+ +e+ ++ ++Ce +++ lC +C ++ H g    H
  GRMZM2G422644_P02 52 KLARCDICENSPAFFYCEIDGTSLCLSCDMTVHVGgkrtH 91
                       6789*****************************6655556 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.9E-9147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.153147IPR000315B-box-type zinc finger
CDDcd000215.16E-8345No hitNo description
PfamPF006433.2E-6342IPR000315B-box-type zinc finger
PROSITE profilePS501199.86951104IPR000315B-box-type zinc finger
SMARTSM003363.3E-105196IPR000315B-box-type zinc finger
PfamPF006433.2E-75291IPR000315B-box-type zinc finger
CDDcd000211.17E-65584No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0004006anatomymesophyll cell
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0025589anatomyleaf lamina tip
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MRTICDVCES APAVLFCAAD EAALCRPCDE KVHMCNKLAS RHVRVGLADP NKLARCDICE  60
NSPAFFYCEI DGTSLCLSCD MTVHVGGKRT HGRYLLLRQR VEEINRAIWM TCLWRSKILK  120
TRESKTRPRS KWQTTITSMI QSLMAIAMAR VTLIRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1192351e-179endosperm| meristem| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G422644
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G422644_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0537710.0BT053771.1 Zea mays full-length cDNA clone ZM_BFb0152K17 mRNA, complete cds.
GenBankBT0839560.0BT083956.1 Zea mays full-length cDNA clone ZM_BFb0058J10 mRNA, complete cds.
GenBankBT0880770.0BT088077.1 Zea mays full-length cDNA clone ZM_BFc0006E22 mRNA, complete cds.
GenBankKJ7279100.0KJ727910.1 Zea mays clone pUT6004 orphans transcription factor (Orphan308) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001345639.17e-72uncharacterized protein LOC100193329
SwissprotC0SVM53e-60BBX19_ARATH; B-box zinc finger protein 19
TrEMBLB7ZWS92e-70B7ZWS9_MAIZE; B-box zinc finger protein 19
STRINGGRMZM2G422644_P013e-71(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.11e-62DBB family protein