PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G422205_P01
Common NameLOC100382893
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 276aa    MW: 30157.4 Da    PI: 7.4601
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G422205_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH382.7e-122751327
                       S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                       ++ C+f+a+tG Ck+G+ CkF+H++
  GRMZM2G422205_P01 27 EPVCSFYAKTGKCKFGAVCKFNHPK 51
                       789********************96 PP

2zf-CCCH38.81.6e-12107132126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        ++++ C+f+++tG CkyG+ C+F+H+
  GRMZM2G422205_P01 107 PGEVDCSFYMKTGSCKYGSICRFNHP 132
                        57899********************9 PP

3zf-CCCH322e-10194217427
                        ---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                          C+f+++tG Cky  +CkF+H++
  GRMZM2G422205_P01 194 IVCDFYMKTGSCKYAQNCKFHHPF 217
                        57********************95 PP

4zf-CCCH375.7e-12248271427
                        ---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                        e C f++r+GtC +G+rCkF H+p
  GRMZM2G422205_P01 248 EACAFYMRSGTCGFGARCKFDHPP 271
                        78********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.7E-62451IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2392452IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.27E-52551IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-92751IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-52950IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-6106133IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.901106134IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-10108132IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.24E-5110133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4112131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-7189219IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-5190217IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.657190218IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-7194217IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-5195215IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5244271IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.892244272IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-6247271IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-5248270IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-9248271IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006505anatomycentral spike of ear inflorescence
PO:0009025anatomyvascular leaf
PO:0009066anatomyanther
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020127anatomyprimary root
PO:0020142anatomystem internode
PO:0025142anatomyleaf tip
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MVNALGTRTD NESLIADTTI LPVRPSEPVC SFYAKTGKCK FGAVCKFNHP KLEDIKTPSL  60
IAKETIYRAT TDAAAHIGGT DDSVPAKTHA PIAPAEAHNA KGLPIRPGEV DCSFYMKTGS  120
CKYGSICRFN HPDRSVVDIA FMAPVQATLP FPAPIVPAVA LNPAANFLQS FDFHATHVPV  180
EPMPMIYPQR PGEIVCDFYM KTGSCKYAQN CKFHHPFDRS APHSKENEDT QQPVALTLAG  240
LPRREDAEAC AFYMRSGTCG FGARCKFDHP PRQDDV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.130410.0ear| meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G422205
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G422205_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0656560.0BT065656.1 Zea mays full-length cDNA clone ZM_BFc0005B18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001169053.10.0uncharacterized LOC100382893
SwissprotQ5ZDJ61e-109C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBLC0PBI70.0C0PBI7_MAIZE; Uncharacterized protein
STRINGGRMZM2G422205_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58163757
Representative plantOGRP67541519
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.14e-73floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu RS,Xu ZF,Lin MC
    Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8.
    J Chem Phys, 2004. 120(14): p. 6566-73
    [PMID:15267548]