PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G422205_P01 | ||||||||
Common Name | LOC100382893 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C3H | ||||||||
Protein Properties | Length: 276aa MW: 30157.4 Da PI: 7.4601 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38 | 2.7e-12 | 27 | 51 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+f+a+tG Ck+G+ CkF+H++ GRMZM2G422205_P01 27 EPVCSFYAKTGKCKFGAVCKFNHPK 51 789********************96 PP | |||||||
2 | zf-CCCH | 38.8 | 1.6e-12 | 107 | 132 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+++tG CkyG+ C+F+H+ GRMZM2G422205_P01 107 PGEVDCSFYMKTGSCKYGSICRFNHP 132 57899********************9 PP | |||||||
3 | zf-CCCH | 32 | 2e-10 | 194 | 217 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 C+f+++tG Cky +CkF+H++ GRMZM2G422205_P01 194 IVCDFYMKTGSCKYAQNCKFHHPF 217 57********************95 PP | |||||||
4 | zf-CCCH | 37 | 5.7e-12 | 248 | 271 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 e C f++r+GtC +G+rCkF H+p GRMZM2G422205_P01 248 EACAFYMRSGTCGFGARCKFDHPP 271 78********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 2.7E-6 | 24 | 51 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.239 | 24 | 52 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.27E-5 | 25 | 51 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.8E-9 | 27 | 51 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.0E-5 | 29 | 50 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.1E-6 | 106 | 133 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.901 | 106 | 134 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.2E-10 | 108 | 132 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.24E-5 | 110 | 133 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-4 | 112 | 131 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.81E-7 | 189 | 219 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.3E-5 | 190 | 217 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.657 | 190 | 218 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-7 | 194 | 217 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.8E-5 | 195 | 215 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-5 | 244 | 271 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.892 | 244 | 272 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.46E-6 | 247 | 271 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.4E-5 | 248 | 270 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-9 | 248 | 271 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MVNALGTRTD NESLIADTTI LPVRPSEPVC SFYAKTGKCK FGAVCKFNHP KLEDIKTPSL 60 IAKETIYRAT TDAAAHIGGT DDSVPAKTHA PIAPAEAHNA KGLPIRPGEV DCSFYMKTGS 120 CKYGSICRFN HPDRSVVDIA FMAPVQATLP FPAPIVPAVA LNPAANFLQS FDFHATHVPV 180 EPMPMIYPQR PGEIVCDFYM KTGSCKYAQN CKFHHPFDRS APHSKENEDT QQPVALTLAG 240 LPRREDAEAC AFYMRSGTCG FGARCKFDHP PRQDDV |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.13041 | 0.0 | ear| meristem| ovary| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G422205 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G422205_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT065656 | 0.0 | BT065656.1 Zea mays full-length cDNA clone ZM_BFc0005B18 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001169053.1 | 0.0 | uncharacterized LOC100382893 | ||||
Swissprot | Q5ZDJ6 | 1e-109 | C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8 | ||||
TrEMBL | C0PBI7 | 0.0 | C0PBI7_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G422205_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5816 | 37 | 57 | Representative plant | OGRP6754 | 15 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 4e-73 | floral homeotic protein (HUA1) |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G422205_P01 |
Publications ? help Back to Top | |||
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