PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G422083_P01
Common NameLOC100381958, MYBR33, ZEAMMB73_657055
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 408aa    MW: 46825.1 Da    PI: 7.1
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G422083_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.81.1e-12158201447
                        S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        WT++E++ ++++ + +G g+Wk I++++  +Rt+ q+ s+ qky
  GRMZM2G422083_P01 158 WTQDEHKNFLRGLEVYGRGNWKNISKYFVPTRTPIQICSHAQKY 201
                        *****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.421146206IPR017930Myb domain
SMARTSM007173.7E-8154204IPR001005SANT/Myb domain
SuperFamilySSF466894.34E-15154206IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-13156205IPR006447Myb domain, plants
CDDcd001671.31E-9158202No hitNo description
PfamPF002493.4E-10158201IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-10158201IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MYVGSYINLL CSSHPSLPMD PNINCAWSAF EIDMVKSFIT SHKTNNTYTN GVAKNHNDIV  60
DELQARFPCK EKQQVIQLYV KLIVEMNTMQ RNNQQVMASN ALMNDNFGVP MEDIDMNNMD  120
MFHGYILDDV EVMKMVEEPL HKQNIVPKKK RQHPVIVWTQ DEHKNFLRGL EVYGRGNWKN  180
ISKYFVPTRT PIQICSHAQK YFHRKEGTTR KQRFSINDID LYDTDPRVQK NSSSLEALTF  240
GHTAYNNKYY DFERQNVVLN KLTHTSQTSS GHVATWTRGQ HIIASSSIDP TMVQSNSLGW  300
EALTFTSDAN NTNNYDFDWQ HDSINNLRCA NQASNNQVAT WTRGQQTTSS SAAPTMVQNT  360
SHSWDVLSFT GNAYNTNYYG FDEQQVALSN ITRGNHGEQQ PGSYLDKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.298580.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G422083
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G422083_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275410.0KJ727541.1 Zea mays clone pUT5401 MYB-related transcription factor (MYBR33) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001168202.10.0uncharacterized protein LOC100381958
TrEMBLA0A3L6G6000.0A0A3L6G600_MAIZE; Transcription factor DIVARICATA
TrEMBLK7TRK60.0K7TRK6_MAIZE; MYB-related transcription factor (Fragment)
STRINGGRMZM2G422083_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Representative plantOGRP2767530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01200.12e-19MYB family protein