PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G421256_P02 | ||||||||
Common Name | LOC100279070 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB_related | ||||||||
Protein Properties | Length: 97aa MW: 11316.9 Da PI: 10.379 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.1 | 5.5e-10 | 56 | 82 | 1 | 28 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIa 28 r +WT++E++l+++a +q+G W++I GRMZM2G421256_P02 56 REKWTEDEHKLFLEALQQHGRA-WRRIQ 82 789*****************88.***96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.27E-7 | 47 | 82 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.2E-8 | 54 | 82 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.7E-7 | 56 | 82 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-6 | 56 | 84 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 97 aa Download sequence Send to blast |
MARFQARSNQ RPAADHVGHR DFMDHLKNTL SSGDMDLPGG ARAPKARKPY TISKQREKWT 60 EDEHKLFLEA LQQHGRAWRR IQGECLCRLW SYTIQAL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.17024 | 1e-138 | endosperm |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G421256 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Morning-phased transcription factor integrating the circadian clock and auxin pathways. Binds to the evening element (EE) of promoters. Does not act within the central clock, but regulates free auxin levels in a time-of-day specific manner. Positively regulates the expression of YUC8 during the day, but has no effect during the night. Negative regulator of freezing tolerance. {ECO:0000269|PubMed:19805390, ECO:0000269|PubMed:23240770}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G421256_P02 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Down-regulated and strongly decreased amplitude of circadian oscillation upon cold treatment. {ECO:0000269|PubMed:19805390, ECO:0000269|PubMed:23240770}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU976661 | 1e-135 | EU976661.1 Zea mays clone 986506 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001145595.1 | 3e-53 | uncharacterized protein LOC100279070 | ||||
Swissprot | F4KGY6 | 2e-14 | RVE1_ARATH; Protein REVEILLE 1 | ||||
TrEMBL | A0A1D6E1V8 | 4e-52 | A0A1D6E1V8_MAIZE; Protein REVEILLE 1 | ||||
STRING | Sb06g026500.1 | 1e-43 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17300.1 | 7e-17 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G421256_P02 |
Publications ? help Back to Top | |||
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