PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G421212_P01 | ||||||||
Common Name | LOC103641907, ZEAMMB73_136468, Zm.86758 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | GATA | ||||||||
Protein Properties | Length: 543aa MW: 59901.7 Da PI: 7.1249 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 50.8 | 2.2e-16 | 7 | 41 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+t+TplWR+gp ++ LCnaCG ++r kg+ GRMZM2G421212_P01 7 CRHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGS 41 ****************55555***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 3.1E-10 | 1 | 53 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 6.18E-11 | 5 | 46 | No hit | No description |
CDD | cd00202 | 4.20E-15 | 6 | 40 | No hit | No description |
PROSITE profile | PS50114 | 11.345 | 7 | 40 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.4E-12 | 7 | 41 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 3.4E-14 | 7 | 41 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF13919 | 1.2E-10 | 272 | 368 | IPR028020 | ASX homology domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 543 aa Download sequence Send to blast |
MGKQGPCRHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG SLANYTPMHR NDNIDDDEPR 60 VSKLKPPTSK LKSQKKKTNH IIMENGPFSG QNFRKMGDVD PSYRSSSGSA VSYSESCAPY 120 GAADASEMTG SAQSHAWESL VPSRKRSCVT RPKPSPVEKL AKELNYIMHE EKLYYLSESS 180 EEDLLYHSET PIGSFEIGSG SVLLRHPNSK SLEEESKTSS IPADNKSYIT SESYSDSASF 240 VVHSGNKAAI NLNLPTARPK KSPLHMEDNA RRDKLHYENQ HVLESVDSPL VSVDLEDVIN 300 YTNFMKYLTK EDRRQLLKFL PPVDSLTPPE SLRSMFSCIQ FSDAIDSYQM LLREGILDPS 360 LCGDEEWKKV KTLALTNLTK CSWLECYKQK KGAKETGGVG GISGPEGFTK STMKPLKRPR 420 DTHFQSDAEL DGTMRSPLRV LKSGALALQF ESSSLPKSGY ATEDSTCTGG APNLFMLPLE 480 KLPLLVPSQY AVSDQDLLLE IPLNARHPEA ELLCQPSQLM SSITSSSTSM GGVAEGEGYL 540 KQP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.30210 | 0.0 | meristem| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G421212 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G421212_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT042487 | 0.0 | BT042487.1 Zea mays full-length cDNA clone ZM_BFb0296I21 mRNA, complete cds. | |||
GenBank | EU962117 | 0.0 | EU962117.1 Zea mays clone 240325 GATA transcription factor 29 mRNA, complete cds. | |||
GenBank | KJ726846 | 0.0 | KJ726846.1 Zea mays clone pUT3386 C2C2-GATA transcription factor (GATA5) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008663440.1 | 0.0 | GATA transcription factor 26 | ||||
TrEMBL | A0A1D6JBJ0 | 0.0 | A0A1D6JBJ0_MAIZE; GATA transcription factor 26 | ||||
STRING | GRMZM2G421212_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4424 | 34 | 64 | Representative plant | OGRP2749 | 15 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17570.3 | 5e-79 | GATA transcription factor 26 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G421212_P01 |
Entrez Gene | 103641907 |