PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G421033_P01 | ||||||||
Common Name | EREB156, LOC100280932, ZEAMMB73_341087 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 233aa MW: 25313.4 Da PI: 9.7224 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.7 | 2.2e-16 | 58 | 107 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr +k +g+WvAeIr+p + r+r++lg++ ta Aa+a++ a +l+g GRMZM2G421033_P01 58 QYRGVRMRK-WGKWVAEIREPHK---RTRIWLGSYATAVAAARAYDTAVFYLRG 107 69*****99.**********732...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.2E-30 | 57 | 116 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-21 | 58 | 116 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.07E-20 | 58 | 116 | No hit | No description |
PROSITE profile | PS51032 | 22.734 | 58 | 115 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-36 | 58 | 121 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.1E-10 | 58 | 107 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-12 | 59 | 70 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-12 | 97 | 117 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MMQGEYRSSI EESAAAAVAA AAAMAPLAAA AVKMEAEQAA MAAPQLGAAH QQTQPRRQYR 60 GVRMRKWGKW VAEIREPHKR TRIWLGSYAT AVAAARAYDT AVFYLRGRSA RLNFPEEIPS 120 FGLADGVDVG EHARDPAAAA AGGGGGCTLS AASIRKKAIE VGSRVDALQT GMVVPPPHHR 180 ERHRHHNHLP QLRVHAEEQQ EEEEQKPQRP AWSGRVKNPD LNRAPSPESS DAE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-15 | 57 | 120 | 4 | 68 | ATERF1 |
3gcc_A | 3e-15 | 57 | 120 | 4 | 68 | ATERF1 |
5wx9_A | 4e-15 | 58 | 127 | 14 | 81 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.99129 | 0.0 | meristem| ovary |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G421033 |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G421033_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU954680 | 0.0 | EU954680.1 Zea mays clone 1476761 dehydration responsive element binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001147324.1 | 1e-168 | uncharacterized protein LOC100280932 | ||||
TrEMBL | B6SPL5 | 1e-167 | B6SPL5_MAIZE; Dehydration responsive element binding protein | ||||
STRING | GRMZM2G421033_P01 | 1e-168 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3943 | 30 | 75 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23340.1 | 6e-31 | DREB and EAR motif protein 3 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G421033_P01 |
Entrez Gene | 100280932 |
Publications ? help Back to Top | |||
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