PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G420280_P01
Common NameLOC103646445
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 498aa    MW: 53733.3 Da    PI: 8.6598
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G420280_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS245.52.1e-75714832374
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                         +lLl+ + a ++gd+++a a+L +++ +as +g dp qR+aa+f++ALaa  +   s   +  ++s+    + +e++ a+++f+++sPi++
  GRMZM2G420280_P01  71 LHLLLASVSAAEAGDARAAAAALHEVRRRASFRGgDPAQRVAAHFARALAASSLVVRSPPGAEAEASPP---TRAERFLAHTMFYQASPIYQ 159
                        799****************************9999**************97644422222222333333...378999************** PP

               GRAS  93 fshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRpeg...............ppslRiTgvgspesgskeeleetgerL 165
                        f+h+taNqaI+ea+++     +r+H++D+d+s+G+QWp+L+q+L++ ++                p slRiTg+g     s++el++t+ rL
  GRMZM2G420280_P01 160 FAHFTANQAIVEAFQSGgrrrRRLHVVDLDVSYGFQWPSLIQSLSAAAAAsaststssashdgdePVSLRITGFGT----SHDELRRTEARL 247
                        **************9877777999********************98773335567777888888677*********....************ PP

               GRAS 166 akfAeel.gvpfefnvlvak.rledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevL.klvkslsPkvvvvveqeadhnse.. 251
                        a+fA+ +  + fef+ +v +   + l+ e+++v   + +++Vnlvl   r    +++ +++r+++L +++ sl+P +v +ve++   +++  
  GRMZM2G420280_P01 248 ARFASGFpSLMFEFDGIVDDgPDSVLRDERIKVVDhDATVVVNLVLPGSRSSMTTGTRQKARSALLaRTIHSLNPSLVFLVEKDGGGGGNnn 339
                        *****98579******98886677789999*99885778999**********9*******999988568***************66533334 PP

               GRAS 252 ..........sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaer...rerhetlekWrerleeaG.Fkpvpl 329
                                   +l  f+ +l+y+sa+fdsl++ lp++s er  +Er  lg ei+++ ac  +++     +h    +Wr+++e++G F+ v+l
  GRMZM2G420280_P01 340 atsrgtgrssLLLPAFTASLRYFSAVFDSLHECLPADSAERLAIERDHLGVEISDAMACLDFNSnggDDDHMAEPSWRQMMERSGlFEGVEL 431
                        678999999889***********************************************99886222579999************8899*** PP

               GRAS 330 sekaakqaklllrkvk.sdg...yrveeesg.slv.lgWkdr.pLvsvSaWr 374
                        s+++++qaklll++ + + g   +rv e +g  ++ l W+dr +L++++ Wr
  GRMZM2G420280_P01 432 STRTVSQAKLLLKMKSaGCGgggFRVVEGEGgRAMsLAWRDReQLITATGWR 483
                        ************98664333344*999764413345****98359******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.99144456IPR005202Transcription factor GRAS
PfamPF035147.2E-7371483IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MNLTLSLATN GGATAKKRKL LRDSVVVDDD VTTSCDGGDR RHGRVARLLL QAGRERVTAK  60
LEADDDRLRL LHLLLASVSA AEAGDARAAA AALHEVRRRA SFRGGDPAQR VAAHFARALA  120
ASSLVVRSPP GAEAEASPPT RAERFLAHTM FYQASPIYQF AHFTANQAIV EAFQSGGRRR  180
RRLHVVDLDV SYGFQWPSLI QSLSAAAAAS ASTSTSSASH DGDEPVSLRI TGFGTSHDEL  240
RRTEARLARF ASGFPSLMFE FDGIVDDGPD SVLRDERIKV VDHDATVVVN LVLPGSRSSM  300
TTGTRQKARS ALLARTIHSL NPSLVFLVEK DGGGGGNNNA TSRGTGRSSL LLPAFTASLR  360
YFSAVFDSLH ECLPADSAER LAIERDHLGV EISDAMACLD FNSNGGDDDH MAEPSWRQMM  420
ERSGLFEGVE LSTRTVSQAK LLLKMKSAGC GGGGFRVVEG EGGRAMSLAW RDREQLITAT  480
GWRRRRPSID HHEARVHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-3410548553381Protein SCARECROW
5b3h_A2e-3410548552380Protein SCARECROW
5b3h_D2e-3410548552380Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1481486WRRRRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1245318e-85pericarp
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G420280
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G420280_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008669401.10.0scarecrow-like protein 23
TrEMBLA0A1D6EAN30.0A0A1D6EAN3_MAIZE; Protein SCARECROW
STRINGGRMZM2G420280_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116493038
Representative plantOGRP81961117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.14e-30GRAS family protein