PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G419901_P01
Common NameEREB38, LOC103631782
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 321aa    MW: 34078.2 Da    PI: 6.4334
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G419901_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.96.8e-202776255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        y+GVr++  +g+WvAeIr+p   +kr+r +lg+f taeeAa a+++a+++l+g
  GRMZM2G419901_P01 27 EYRGVRQRT-WGKWVAEIREP---NKRTRLWLGSFATAEEAALAYDEAARRLYG 76
                       69****999.**********9...337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.11E-282686No hitNo description
PfamPF008477.1E-142776IPR001471AP2/ERF domain
PROSITE profilePS5103222.552784IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-302785IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-212785IPR016177DNA-binding domain
SMARTSM003801.7E-362790IPR001471AP2/ERF domain
PRINTSPR003673.2E-102839IPR001471AP2/ERF domain
PRINTSPR003673.2E-105066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MESYGRKRAW KKGPTRGKGG PQNAACEYRG VRQRTWGKWV AEIREPNKRT RLWLGSFATA  60
EEAALAYDEA ARRLYGPDAF LNLPHLRVSA AAAHQRIRWL PASARGAAAA AVPAYGLLNL  120
NAQHNVHVIH QRLQELKNNG SPAKPPPPAP RVSPAARQQQ LAPADHLPVA STSPCSTVTT  180
HAAAAALPPP MSCFHALDLD LEQAVATAAM TTVDDAEPFE GGGAFPPGAD KPQLDLREFL  240
QQIGVLKTDD DGTATAKGSL HGDAADAGCF GGNGEFDWDA LAADLNDIAG AHGGANGGFQ  300
MDDLHEVDQF GTCLPIPVWD V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-172890668ATERF1
3gcc_A5e-172890668ATERF1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO169162982e-90
Expression AtlasGRMZM2G419901-
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G419901_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278740.0KJ727874.1 Zea mays clone pUT5967 AP2-EREBP transcription factor (EREB38) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008651496.10.0dehydration-responsive element-binding protein 2E
SwissprotQ10R181e-129DRE2E_ORYSJ; Dehydration-responsive element-binding protein 2E
TrEMBLA0A060D2200.0A0A060D220_MAIZE; AP2-EREBP transcription factor (Fragment)
STRINGGRMZM2G419901_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95752939
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.14e-46ERF family protein