PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G418899_P02
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 397aa    MW: 43765.3 Da    PI: 7.9442
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G418899_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS126.13.9e-3921859194
               GRAS   9 AeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                        A+a + g+    +++Larl+++  p g+p+ R a+y++eAL   l++     +++ ++  +s+ +++ +l a+k fs++s +l+f+++ta q
  GRMZM2G418899_P02   2 AKAAEVGNSIGRREILARLNQQLPPIGKPFLRSASYLKEALLLALTD-----SHQGSTHLSSPLDVTLKLGAYKSFSDLSHVLQFANFTATQ 88 
                        7778888888899**********************************.....555566666666799************************* PP

               GRAS 101 aIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                        a+l+++++   +++HiiDf+++ G+QW+++lq+La R+    ++ p+l++T+++s++s++  el+ t+e+L++fA  lg+pfef+ +   +l
  GRMZM2G418899_P02  89 ALLDEIASTtsSCIHIIDFNLGVGGQWASFLQELAHRRgtgnAPLPMLKLTAFVSSASHHPLELHLTRENLTQFAVDLGIPFEFTDI---NL 177
                        ****998877799************************988666688***************************************98...67 PP

               GRAS 187 edleleeL 194
                        + +++ eL
  GRMZM2G418899_P02 178 DVFDPAEL 185
                        77776666 PP
2GRAS66.26.4e-21192295255364
               GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346
                        e+f+++++ ++ l+dsl+a  +++ + ++k+Er+l++++++++v  ++++     e+++ Wr+ +++aGF pvpls+ a++qa++ll++v++
  GRMZM2G418899_P02 192 EHFMNCFQPCMFLLDSLDAA-GTNVDVASKIERFLIQPRVEDAVLGRQKA-----EKAMAWRAVFTSAGFAPVPLSNLAEAQADYLLKRVQV 277
                        68***************998.7888*******************999887.....99*********************************** PP

               GRAS 347 dgyrveeesgslvlgWkd 364
                        +g++ve+    l l+W++
  GRMZM2G418899_P02 278 RGFHVEKCGMGLALYWQS 295
                        ****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098525.6061397IPR005202Transcription factor GRAS
PfamPF035141.4E-362185IPR005202Transcription factor GRAS
PfamPF035142.2E-18192295IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MAKAAEVGNS IGRREILARL NQQLPPIGKP FLRSASYLKE ALLLALTDSH QGSTHLSSPL  60
DVTLKLGAYK SFSDLSHVLQ FANFTATQAL LDEIASTTSS CIHIIDFNLG VGGQWASFLQ  120
ELAHRRGTGN APLPMLKLTA FVSSASHHPL ELHLTRENLT QFAVDLGIPF EFTDINLDVF  180
DPAELIAPSP NEHFMNCFQP CMFLLDSLDA AGTNVDVASK IERFLIQPRV EDAVLGRQKA  240
EKAMAWRAVF TSAGFAPVPL SNLAEAQADY LLKRVQVRGF HVEKCGMGLA LYWQSALPPH  300
QEIGMLSLSP TMTEVYLLLG ARAYWLLHRG HAMALLGARR DGRHTHLQRG ARVCRACLRA  360
VEKRGQSGTE PSARYYIDSL PPRQRPPDFA APTGEWH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.794930.0aerial organ| ear| embryo| endosperm| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G418899
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G418899_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0620280.0BT062028.1 Zea mays full-length cDNA clone ZM_BFb0207H13 mRNA, complete cds.
GenBankKJ7269560.0KJ726956.1 Zea mays clone pUT3653 GRAS transcription factor (GRAS79) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001167982.10.0uncharacterized protein LOC100381701
TrEMBLA0A1D6IIN90.0A0A1D6IIN9_MAIZE; Scarecrow-like protein 6
TrEMBLA0A3L6E1I70.0A0A3L6E1I7_MAIZE; Scarecrow-like protein 6
STRINGGRMZM2G418899_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.12e-60GRAS family protein