PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G418899_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 431aa    MW: 47773.6 Da    PI: 5.7168
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G418899_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS125.94.8e-3921859194
               GRAS   9 AeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                        A+a + g+    +++Larl+++  p g+p+ R a+y++eAL   l++     +++ ++  +s+ +++ +l a+k fs++s +l+f+++ta q
  GRMZM2G418899_P01   2 AKAAEVGNSIGRREILARLNQQLPPIGKPFLRSASYLKEALLLALTD-----SHQGSTHLSSPLDVTLKLGAYKSFSDLSHVLQFANFTATQ 88 
                        7778888888899**********************************.....555566666666799************************* PP

               GRAS 101 aIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                        a+l+++++   +++HiiDf+++ G+QW+++lq+La R+    ++ p+l++T+++s++s++  el+ t+e+L++fA  lg+pfef+ +   +l
  GRMZM2G418899_P01  89 ALLDEIASTtsSCIHIIDFNLGVGGQWASFLQELAHRRgtgnAPLPMLKLTAFVSSASHHPLELHLTRENLTQFAVDLGIPFEFTDI---NL 177
                        ****998877799************************988666688***************************************98...67 PP

               GRAS 187 edleleeL 194
                        + +++ eL
  GRMZM2G418899_P01 178 DVFDPAEL 185
                        77776666 PP
2GRAS667.4e-21192295255364
               GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346
                        e+f+++++ ++ l+dsl+a  +++ + ++k+Er+l++++++++v  ++++     e+++ Wr+ +++aGF pvpls+ a++qa++ll++v++
  GRMZM2G418899_P01 192 EHFMNCFQPCMFLLDSLDAA-GTNVDVASKIERFLIQPRVEDAVLGRQKA-----EKAMAWRAVFTSAGFAPVPLSNLAEAQADYLLKRVQV 277
                        68***************998.7888*******************999887.....99*********************************** PP

               GRAS 347 dgyrveeesgslvlgWkd 364
                        +g++ve+    l l+W++
  GRMZM2G418899_P01 278 RGFHVEKCGMGLALYWQS 295
                        ****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098525.6171431IPR005202Transcription factor GRAS
PfamPF035141.7E-362185IPR005202Transcription factor GRAS
PfamPF035142.6E-18192295IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MAKAAEVGNS IGRREILARL NQQLPPIGKP FLRSASYLKE ALLLALTDSH QGSTHLSSPL  60
DVTLKLGAYK SFSDLSHVLQ FANFTATQAL LDEIASTTSS CIHIIDFNLG VGGQWASFLQ  120
ELAHRRGTGN APLPMLKLTA FVSSASHHPL ELHLTRENLT QFAVDLGIPF EFTDINLDVF  180
DPAELIAPSP NEHFMNCFQP CMFLLDSLDA AGTNVDVASK IERFLIQPRV EDAVLGRQKA  240
EKAMAWRAVF TSAGFAPVPL SNLAEAQADY LLKRVQVRGF HVEKCGMGLA LYWQSALPPH  300
QEIGMLSLSP TMTEVYLLLG ARAYWLLHRG HAMALLGARR DGRHTHLQRG ARVCRACLRA  360
VEKRGQSGTE PSARILQLLL ENGIRVNELT RTKAALILPS VFDDPDEVDK EKEVEYEEIE  420
EEVEYEEIEE D
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.794930.0aerial organ| ear| embryo| endosperm| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G418899
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G418899_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0620280.0BT062028.1 Zea mays full-length cDNA clone ZM_BFb0207H13 mRNA, complete cds.
GenBankKJ7269560.0KJ726956.1 Zea mays clone pUT3653 GRAS transcription factor (GRAS79) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001167982.10.0uncharacterized protein LOC100381701
TrEMBLA0A1D6IIN90.0A0A1D6IIN9_MAIZE; Scarecrow-like protein 6
TrEMBLA0A3L6E1I70.0A0A3L6E1I7_MAIZE; Scarecrow-like protein 6
STRINGGRMZM2G418899_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Representative plantOGRP17501242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.18e-60GRAS family protein