PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G416701_P02 | ||||||||
Common Name | Zm.99687 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | AP2 | ||||||||
Protein Properties | Length: 245aa MW: 26541.2 Da PI: 6.3086 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.9 | 2.2e-17 | 152 | 201 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g GRMZM2G416701_P02 152 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 201 78*******************......55************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.96E-16 | 152 | 210 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.0E-9 | 152 | 201 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.89E-12 | 153 | 211 | No hit | No description |
PROSITE profile | PS51032 | 17.794 | 153 | 209 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-32 | 153 | 215 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-17 | 153 | 210 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MELDLNVAEV APEKPSAALE ASDSGSSGSS VLNAEAASAG GGGPAPGEEG SSSTPAVLEF 60 SILRSDSDAA GADADDGDAT PSPPRHHQQQ LVTRELFPAP QHWAELGFFR AGPQQQPDIR 120 VLPHPHPYPP PPPPAQPQQA KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG 180 GFDTAHAAAR AYDRAAIKFR GVDADINFNL SDYDDDMKQV HTRVFLQLAP TETSAERTRM 240 ALCTR |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G416701 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G416701_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT084196 | 0.0 | BT084196.2 Zea mays full-length cDNA clone ZM_BFb0088B01 mRNA, complete cds. | |||
GenBank | BT086086 | 0.0 | BT086086.2 Zea mays full-length cDNA clone ZM_BFc0114A11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008648591.1 | 1e-157 | AP2-like ethylene-responsive transcription factor TOE3 isoform X1 | ||||
Refseq | XP_008648593.1 | 1e-158 | AP2-like ethylene-responsive transcription factor TOE3 isoform X3 | ||||
Refseq | XP_020394749.1 | 1e-157 | AP2-like ethylene-responsive transcription factor TOE3 isoform X2 | ||||
Swissprot | B8AXC3 | 3e-62 | AP21_ORYSI; APETALA2-like protein 1 | ||||
TrEMBL | A0A1D6LGX5 | 1e-156 | A0A1D6LGX5_MAIZE; Putative AP2/EREBP transcription factor superfamily protein | ||||
TrEMBL | A0A1D6LGX6 | 1e-156 | A0A1D6LGX6_MAIZE; Putative AP2/EREBP transcription factor superfamily protein | ||||
STRING | GRMZM2G416701_P01 | 1e-157 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.2 | 1e-31 | related to AP2.7 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G416701_P02 |