PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G416701_P01
Common NameZm.99687
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family AP2
Protein Properties Length: 447aa    MW: 49379.1 Da    PI: 8.5793
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G416701_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.4e-17152201155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  GRMZM2G416701_P01 152 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 201
                        78*******************......55************************997 PP
2AP228.15.1e-09244283144
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAak 44 
                        s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+
  GRMZM2G416701_P01 244 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAAR 283
                        89********.7******5553..2.26**********779887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.0E-9152201IPR001471AP2/ERF domain
SuperFamilySSF541715.23E-16152210IPR016177DNA-binding domain
CDDcd000185.53E-11153211No hitNo description
SMARTSM003802.0E-32153215IPR001471AP2/ERF domain
PROSITE profilePS5103217.794153209IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-17153210IPR001471AP2/ERF domain
CDDcd000184.44E-21244321No hitNo description
PfamPF008471.1E-4244283IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-11244320IPR016177DNA-binding domain
SMARTSM003806.9E-24245325IPR001471AP2/ERF domain
PROSITE profilePS510329.045245319IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-5245283IPR001471AP2/ERF domain
PRINTSPR003674.5E-6246257IPR001471AP2/ERF domain
PRINTSPR003674.5E-6301321IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020142anatomystem internode
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MELDLNVAEV APEKPSAALE ASDSGSSGSS VLNAEAASAG GGGPAPGEEG SSSTPAVLEF  60
SILRSDSDAA GADADDGDAT PSPPRHHQQQ LVTRELFPAP QHWAELGFFR AGPQQQPDIR  120
VLPHPHPYPP PPPPAQPQQA KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG  180
GFDTAHAAAR AYDRAAIKFR GVDADINFNL SDYDDDMKQM KSLSKEEFVH ALRRQSTGFS  240
RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDSEVE AARVEYRLDI RFSLPFRDPR  300
AYDKAAIKCN GREAVTNFEP STYDGELLLT AEASAEVADD VDLNLSISQP ASSQSPKRDK  360
NCLGPQLHHH HGRPFDGSAV LKKTKIDAPS ELSSAGRPHR SFLPHLVAAE HLPPRSHPFF  420
ITHHEVRRHY TVLNHLQRFV KLARLAS
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G416701
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G416701_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0841960.0BT084196.2 Zea mays full-length cDNA clone ZM_BFb0088B01 mRNA, complete cds.
GenBankBT0860860.0BT086086.2 Zea mays full-length cDNA clone ZM_BFc0114A11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315195.10.0AP2-like ethylene-responsive transcription factor TOE3
SwissprotB8AXC31e-147AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A1D6LGX60.0A0A1D6LGX6_MAIZE; Putative AP2/EREBP transcription factor superfamily protein
STRINGGRMZM2G416701_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100832935
Representative plantOGRP4971784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.24e-91AP2 family protein