PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G416524_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TCP
Protein Properties Length: 297aa    MW: 32374.4 Da    PI: 10.9627
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G416524_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.76.1e-361162406116
                TCP   6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...ssssasec.eaesssssas.nsssgkaak 92 
                         +++  hTkv+gR+RR+Rl+++c ar+F+L+ eLG+++d++tieWLlqqa+pai ++tgt   ++ +a+++  a s +s+++ ++ss+++ +
  GRMZM2G416524_P01 116 APTKGWHTKVEGRGRRIRLPVLCEARVFQLTGELGHKTDGETIEWLLQQAEPAIVAATGTvttTTMPANFSsLAISLRSADAsHPSSASRPA 207
                        578889******************************************************98866666666656665555541555556666 PP

                TCP  93 saakskksqksaasalnlakesr.........a 116
                        + ++  ++q++ a++l+ +++++         +
  GRMZM2G416524_P01 208 AYHHLLPQQHKVAAMLAWHHHHHqqllpphpqQ 240
                        66799999999999*****98884555554441 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-32118259IPR005333Transcription factor, TCP
PROSITE profilePS5136924.547118172IPR017887Transcription factor TCP subgroup
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MRRQAARAPL RPLVAGAPPS TRLEPQQGPV LRVRRRVQHT TRSTTPPPPP TRPGWRPFMR  60
SLAIAPAAPA VAGGAREVQL AQQQQSAEAH AGAGSSGVYC GRGQEGRGAR GSREQAPTKG  120
WHTKVEGRGR RIRLPVLCEA RVFQLTGELG HKTDGETIEW LLQQAEPAIV AATGTVTTTT  180
MPANFSSLAI SLRSADASHP SSASRPAAYH HLLPQQHKVA AMLAWHHHHH QQLLPPHPQQ  240
QQQAPQDPGV EEFMRKRYRE GTDDLFMDPT TRQHHPDDSG GEAEDHKAHV TLAATAM
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G416524
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G416524_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978832.12e-67transcription factor PCF3
SwissprotQ53PH21e-52PCF3_ORYSJ; Transcription factor PCF3
TrEMBLA0A1D6EHJ35e-88A0A1D6EHJ3_MAIZE; Transcription factor TCP8
STRINGGRMZM2G416524_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49342652
Representative plantOGRP45911023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.11e-27TCP family protein