PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G415251_P01
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family AP2
Protein Properties Length: 310aa    MW: 33561.7 Da    PI: 11.1558
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G415251_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.39.3e-143483155
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                       ++y GV +++ rgr+vA+ rd      + kr +lg+f+tae+Aa++++    +l+g
  GRMZM2G415251_P01 34 PRYMGVLRRR-RGRYVARTRDR-----KgKRMWLGTFDTAEKAARRYDSETHRLRG 83
                       6899**7666.8******9993.....34*******************98888877 PP

2AP244.34.5e-14205254155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        ++y+GV +  +rgr+vA+ +d      + kr +lg+f+taeeAa++++   ++l+g
  GRMZM2G415251_P01 205 PRYRGVLR-QRRGRYVARTHDR-----KgKRMWLGTFDTAEEAARRYDSETRRLRG 254
                        68****64.558******8883.....34*******************99888887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.47E-153493No hitNo description
PfamPF008477.2E-93476IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-203592IPR001471AP2/ERF domain
PROSITE profilePS5103218.2813591IPR001471AP2/ERF domain
SMARTSM003806.4E-213597IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-163592IPR016177DNA-binding domain
PfamPF008476.3E-9205247IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-16206263IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-20206263IPR001471AP2/ERF domain
SMARTSM003808.2E-22206268IPR001471AP2/ERF domain
PROSITE profilePS5103218.321206262IPR001471AP2/ERF domain
PRINTSPR003674.3E-6207218IPR001471AP2/ERF domain
CDDcd000181.44E-19207264No hitNo description
PRINTSPR003674.3E-6228244IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MEEHRPRCNA TAPTRRVAGG GKRKAAAAGA PTEPRYMGVL RRRRGRYVAR TRDRKGKRMW  60
LGTFDTAEKA ARRYDSETHR LRGPSAITNF PATSDDRVPL PAPSLHAVEE HSFAADESQP  120
VVGSPVSTTP PTKPLDAVAE TLSTFSSSDE ADAGGGAEAA AGPRKFVMEI HMEEHRSRCN  180
ATAPTRRVAG GGKRKAAAAG APAKPRYRGV LRQRRGRYVA RTHDRKGKRM WLGTFDTAEE  240
AARRYDSETR RLRGPSAITN FPTTSDDRVP LPAPSLHAMD GHSFAADESQ PVVGSPVSTK  300
PPLKPVDAAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-13352621472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12143KRKAAAAGAPTEPRYMGVLRRRR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G415251
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G415251_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277130.0KJ727713.1 Zea mays clone pUT5652 AP2-EREBP transcription factor (EREB123) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020396639.11e-145AP2/ERF and B3 domain-containing protein Os05g0549800
TrEMBLA0A1D6JRN01e-163A0A1D6JRN0_MAIZE; Uncharacterized protein
STRINGGRMZM2G415251_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131332332
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.14e-12ERF family protein