PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G415251_P01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | AP2 | ||||||||
Protein Properties | Length: 310aa MW: 33561.7 Da PI: 11.1558 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.3 | 9.3e-14 | 34 | 83 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y GV +++ rgr+vA+ rd + kr +lg+f+tae+Aa++++ +l+g GRMZM2G415251_P01 34 PRYMGVLRRR-RGRYVARTRDR-----KgKRMWLGTFDTAEKAARRYDSETHRLRG 83 6899**7666.8******9993.....34*******************98888877 PP | |||||||
2 | AP2 | 44.3 | 4.5e-14 | 205 | 254 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GV + +rgr+vA+ +d + kr +lg+f+taeeAa++++ ++l+g GRMZM2G415251_P01 205 PRYRGVLR-QRRGRYVARTHDR-----KgKRMWLGTFDTAEEAARRYDSETRRLRG 254 68****64.558******8883.....34*******************99888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.47E-15 | 34 | 93 | No hit | No description |
Pfam | PF00847 | 7.2E-9 | 34 | 76 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-20 | 35 | 92 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.281 | 35 | 91 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.4E-21 | 35 | 97 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.89E-16 | 35 | 92 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.3E-9 | 205 | 247 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.1E-16 | 206 | 263 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-20 | 206 | 263 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.2E-22 | 206 | 268 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.321 | 206 | 262 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-6 | 207 | 218 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.44E-19 | 207 | 264 | No hit | No description |
PRINTS | PR00367 | 4.3E-6 | 228 | 244 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MEEHRPRCNA TAPTRRVAGG GKRKAAAAGA PTEPRYMGVL RRRRGRYVAR TRDRKGKRMW 60 LGTFDTAEKA ARRYDSETHR LRGPSAITNF PATSDDRVPL PAPSLHAVEE HSFAADESQP 120 VVGSPVSTTP PTKPLDAVAE TLSTFSSSDE ADAGGGAEAA AGPRKFVMEI HMEEHRSRCN 180 ATAPTRRVAG GGKRKAAAAG APAKPRYRGV LRQRRGRYVA RTHDRKGKRM WLGTFDTAEE 240 AARRYDSETR RLRGPSAITN FPTTSDDRVP LPAPSLHAMD GHSFAADESQ PVVGSPVSTK 300 PPLKPVDAAA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-13 | 35 | 262 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 21 | 43 | KRKAAAAGAPTEPRYMGVLRRRR |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G415251 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G415251_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727713 | 0.0 | KJ727713.1 Zea mays clone pUT5652 AP2-EREBP transcription factor (EREB123) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020396639.1 | 1e-145 | AP2/ERF and B3 domain-containing protein Os05g0549800 | ||||
TrEMBL | A0A1D6JRN0 | 1e-163 | A0A1D6JRN0_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G415251_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13133 | 23 | 32 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72360.1 | 4e-12 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G415251_P01 |