PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G415077_P01 | ||||||||
Common Name | MYBR45, Zm.1353 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB_related | ||||||||
Protein Properties | Length: 171aa MW: 18706.5 Da PI: 10.3583 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.5 | 1.3e-12 | 27 | 71 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E+ ++++a ++G + Wk++ + + ++t+ q++s+ qk+ GRMZM2G415077_P01 27 REKWTADEHGRFLHALLLFGRD-WKRVQAFVA-TKTGTQIRSHAQKH 71 789*****************77.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.814 | 22 | 76 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.41E-14 | 22 | 76 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-7 | 26 | 74 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 3.7E-14 | 26 | 74 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 6.6E-7 | 27 | 71 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.3E-10 | 27 | 71 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.08E-6 | 29 | 72 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009074 | anatomy | style | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MAAAAVKSSA GMAGKKSRKP YVVSRPREKW TADEHGRFLH ALLLFGRDWK RVQAFVATKT 60 GTQIRSHAQK HFLRADKKLG LAVPPRHPHR SAAGCPAWCA DDGGTLAPDV ETVQFPLSPD 120 DLRLAQVYRF VGDVLGSSVE AQLHRLLGAD PVVVDTVLRV LANLQDNLDI L |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.1353 | 0.0 | meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G415077 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G415077_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU976186 | 0.0 | EU976186.1 Zea mays clone 679787 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001145539.1 | 1e-122 | uncharacterized LOC100278975 | ||||
Swissprot | Q54IF9 | 2e-24 | MYBG_DICDI; Myb-like protein G | ||||
TrEMBL | A0A317Y9E7 | 1e-121 | A0A317Y9E7_MAIZE; Myb-like protein G | ||||
TrEMBL | B6UG21 | 1e-121 | B6UG21_MAIZE; MYB-related transcription factor | ||||
STRING | GRMZM2G415077_P01 | 1e-121 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3642 | 31 | 70 | Representative plant | OGRP1255 | 15 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09600.2 | 2e-25 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G415077_P01 |
Entrez Gene | 100278975 |
Publications ? help Back to Top | |||
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