PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G414805_P04 | ||||||||
Common Name | SBP25 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | SBP | ||||||||
Protein Properties | Length: 439aa MW: 47112.4 Da PI: 9.2527 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 126.9 | 7.7e-40 | 160 | 236 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC++dls+ak+y+r+hkvC vhska++v+v+gle+rfCqqCsrfh l efD++krsCrrrL +hn+rrrk+qa GRMZM2G414805_P04 160 CQVEGCKVDLSSAKDYNRKHKVCVVHSKATKVVVAGLERRFCQQCSRFHGLAEFDQNKRSCRRRLMHHNARRRKPQA 236 **************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 7.6E-32 | 152 | 221 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 30.975 | 157 | 234 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.1E-37 | 158 | 240 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 6.0E-30 | 160 | 233 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 439 aa Download sequence Send to blast |
MGSFGMNWNQ KDPMVWDWEH LVPSVSNAVT RHGSANSSGG TLTSNSELGH GSSKSSISAS 60 IDSPSGVGNS LEFNFAAVER HVKNTGTNGR VDDSGNSPSS MIAFNQGEPL ISLKLGKRAY 120 FENACGGQDA KVSAASDVTS AASVVKKTKV SQQNAKNWYC QVEGCKVDLS SAKDYNRKHK 180 VCVVHSKATK VVVAGLERRF CQQCSRFHGL AEFDQNKRSC RRRLMHHNAR RRKPQADTIS 240 FNSSTMFYDT RQRTNLFFSQ PLYGQVRSNA GSSWDNLGGL KFMETKHPPV HPTKTASPDE 300 LHFSALQITS AAAHTGHHHD LDGFMAFKGT STKVLNQGVE AWAAASSSNN GGPEGGRALS 360 LLSDGSWGSS SAVIQQPTSH ADAGALLPPL ATVAVSNAAA AAGHPLDPSP GRFWPQDDHP 420 PLVDGPATQI PELAHLRIW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 6e-27 | 160 | 233 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.26561 | 0.0 | ear| meristem| pericarp| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G414805 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269|PubMed:16861571}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G414805_P04 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU963637 | 0.0 | EU963637.1 Zea mays clone 265056 squamosa promoter-binding-like protein 11 mRNA, complete cds. | |||
GenBank | EU969824 | 0.0 | EU969824.1 Zea mays clone 336108 squamosa promoter-binding-like protein 11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001149534.1 | 0.0 | SBP-transcription factor25 | ||||
Refseq | NP_001352585.1 | 0.0 | SBP-transcription factor25 | ||||
Refseq | XP_008643717.1 | 0.0 | squamosa promoter-binding-like protein 11 isoform X1 | ||||
Refseq | XP_008643719.1 | 0.0 | squamosa promoter-binding-like protein 11 isoform X1 | ||||
Refseq | XP_008643720.1 | 0.0 | squamosa promoter-binding-like protein 11 isoform X1 | ||||
Swissprot | A2YGR5 | 1e-149 | SPL12_ORYSI; Squamosa promoter-binding-like protein 12 | ||||
TrEMBL | B6TF72 | 0.0 | B6TF72_MAIZE; SBP transcription factor | ||||
STRING | GRMZM2G414805_P05 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 2e-34 | squamosa promoter binding protein-like 2 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G414805_P04 |
Entrez Gene | 100283160 |
Publications ? help Back to Top | |||
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