PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G414114_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TCP
Protein Properties Length: 367aa    MW: 42293 Da    PI: 8.5652
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G414114_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP75.71.4e-231822611473
                TCP  14 kvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................ssssasec 73 
                        ++g+RdRR+Rls+ +a++f +Lqd+LGfdk+skt++WLl q+kp i+ l++                     +s+s++ c
  GRMZM2G414114_P01 182 AQGLRDRRMRLSVGVAREFLALQDRLGFDKASKTLNWLLAQSKPPIDCLVDAadqvavvtggrptlvkgrelGSNSSTCC 261
                        89***********************************************9997777777777776666666544444333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139638.8E-18582IPR029480Transposase-associated domain
PROSITE profilePS5136921.938162230IPR017887Transcription factor TCP subgroup
PfamPF036341.3E-21182277IPR005333Transcription factor, TCP
SMARTSM002711.2E-11278335IPR001623DnaJ domain
PROSITE profilePS5007612.978279346IPR001623DnaJ domain
SuperFamilySSF465651.01E-13280316IPR001623DnaJ domain
CDDcd062574.53E-13280315IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1101.7E-14280321IPR001623DnaJ domain
PfamPF002261.4E-12280319IPR001623DnaJ domain
PRINTSPR006255.9E-10281299IPR001623DnaJ domain
PRINTSPR006255.9E-10299314IPR001623DnaJ domain
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MEEDRRWMYK GWKKRGALSS EWVVKTDAFL DHAFARPETG TDVRYPYSKC RNIYFHDRRT  60
MSIDLYKNGY MPGYEEWVHH GEDPPLHTVS EVQSHEEGTT IGWKRCLTMY AISFYSSIWR  120
TPVNPPIMRI HLRLSYPIYG CLYDNTILLQ KRYKLPEDGS YGRGRTTEVV VPDDSAQQDP  180
HAQGLRDRRM RLSVGVAREF LALQDRLGFD KASKTLNWLL AQSKPPIDCL VDAADQVAVV  240
TGGRPTLVKG RELGSNSSTC CLTDSRWDKS LNCSKCVTYC FQILGVGKTT SQQEIKKAYH  300
KLALRLHPDK NPGDEVTEAD IEEFEAKYRG SDYEKTDLKG LYTKYKGNMN RNNYLLYHIV  360
KSETVLL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.398041e-130tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G414114
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G414114_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2267231e-164AC226723.4 Zea mays BAC clone CH201-110I20 from chromosome 6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGGRMZM2G414114_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1422
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.19e-19TCP family protein