PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G412430_P02 | ||||||||
Common Name | umc2227 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 280aa MW: 29866.3 Da PI: 4.7547 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.7 | 5.7e-05 | 229 | 268 | 10 | 54 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 rrRR+ri + + Lr ++P + a++L +A+ Y+++L GRMZM2G412430_P02 229 RRRRERIQETVAALRNMVPGG---I--AKDAAAVLDEAICYLQYL 268 9******************96...1..24679***********99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.702 | 219 | 268 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.4E-8 | 229 | 276 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-7 | 229 | 276 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MGDKVNPWCH CHWHNPAWKS DTESCAGDLH PPDAGHLTAD SVALAPILEF PPPYPSRKRP 60 LVLYQKEKRA PVLPAPLPSK GPPPLDPVPE LQGSNETDVT DAGAGEETEE GMHENRDEIN 120 ALLDTDRQSG GAALSVESVA SAGAGAGAAP PPAAKKRRLS SCTDKSVVDT ASSAARPPER 180 SMEQEQRVEL ANDRDAQSCC VGEVESGRRF ALGEAEAEAA EGDSPDEQRR RRERIQETVA 240 ALRNMVPGGI AKDAAAVLDE AICYLQYLKL KVKTLGAVSL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.18626 | 0.0 | ear| meristem| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G412430 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G412430_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT040465 | 0.0 | BT040465.1 Zea mays full-length cDNA clone ZM_BFc0095L04 mRNA, complete cds. | |||
GenBank | BT066898 | 0.0 | BT066898.1 Zea mays full-length cDNA clone ZM_BFb0087E07 mRNA, complete cds. | |||
GenBank | EU956184 | 0.0 | EU956184.1 Zea mays clone 1558574 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001143014.1 | 0.0 | uncharacterized protein LOC100275478 | ||||
Refseq | NP_001335845.1 | 0.0 | uncharacterized protein LOC100275478 | ||||
TrEMBL | A0A1D6K4X9 | 0.0 | A0A1D6K4X9_MAIZE; Conserved peptide upstream open reading frame 37 | ||||
TrEMBL | B4FTM7 | 0.0 | B4FTM7_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G412430_P03 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10031 | 18 | 20 | Representative plant | OGRP12765 | 3 | 4 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G412430_P02 |
Entrez Gene | 100275478 |
Publications ? help Back to Top | |||
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