PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G410083_P01
Common NameZEAMMB73_323924
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 279aa    MW: 31044.7 Da    PI: 7.452
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G410083_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.29e-192187147
                       TSSS-HHHHHHHHHHHHHTTTT.....................-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.....................tWktIartmgkgRtlkqcksrwqky 47
                       +g+WT +Ed+llv+ v+q+G g                     +W+tIar ++ gRt++++k++w+++
  GRMZM2G410083_P01 21 KGPWTSQEDKLLVEHVRQHGEGrwnsvsklaeeangqayflmvRWSTIARSLP-GRTDNEIKNYWRTH 87
                       79***************************************************.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.841692IPR017930Myb domain
SMARTSM007175.3E-152090IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-192090IPR009057Homeodomain-like
PfamPF002496.4E-92151IPR001005SANT/Myb domain
SuperFamilySSF466892.94E-132189IPR009057Homeodomain-like
CDDcd001676.21E-122388No hitNo description
PfamPF002491.4E-66487IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MEEGPLGWGR RQEEVVDGWR KGPWTSQEDK LLVEHVRQHG EGRWNSVSKL AEEANGQAYF  60
LMVRWSTIAR SLPGRTDNEI KNYWRTHFKK GKPSKNVERA RARFLKQRRE MMQQQQQQSS  120
LGRQHLHLDE GGDQRRGACC TTGATAASGD NDCGSATGDA CAPPPTTTVA TEGAGADLVM  180
HDAMDCFLCP MSCCDDLLVL HGAGGQAGTG QLLRLNGQRR VILNLGTRFC NLSEDDLSEH  240
SLKKKKFVAG SVGQKRTGRK DMDDERNEDS TDEDKQDKL
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G410083
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G410083_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0992831e-45AK099283.1 Oryza sativa Japonica Group cDNA clone:J023132O17, full insert sequence.
GenBankAK1118071e-45AK111807.1 Oryza sativa Japonica Group cDNA clone:J013104N22, full insert sequence.
GenBankAP0039801e-45AP003980.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1014_H03.
GenBankAP0040831e-45AP004083.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1212_C01.
GenBankAP0149581e-45AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126101e-45CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020401716.11e-133transcription factor MYB2
TrEMBLA0A1D6J9Z81e-132A0A1D6J9Z8_MAIZE; Putative MYB DNA-binding domain superfamily protein
STRINGGRMZM2G410083_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32433584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.13e-30myb domain protein 79