PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G409881_P02
Common NameZm.37049
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WOX
Protein Properties Length: 505aa    MW: 53254.9 Da    PI: 7.6116
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G409881_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox48.21.9e-1553112256
                        T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS
           Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 
                        r+R+++ +eq+++Le  F++   +p ++e++++  +l     + +++V++WFqNr+ + k
  GRMZM2G409881_P02  53 RPRWNPRPEQIRILEGIFNSgMVNPPRDEIRRIRLQLqeygPVGDANVFYWFQNRKSRTK 112
                        89*****************99****************99999****************99 PP
2Wus_type_Homeobox105.82.8e-3452114264
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                        +r+RW+P+peQi+iLe +++sG+++P+++ei+ri+ +L+eyG ++d+NVfyWFQNrk+R ++k
  GRMZM2G409881_P02  52 PRPRWNPRPEQIRILEGIFNSGMVNPPRDEIRRIRLQLQEYGPVGDANVFYWFQNRKSRTKHK 114
                        689**********************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.96149114IPR001356Homeobox domain
SuperFamilySSF466891.31E-1150118IPR009057Homeodomain-like
SMARTSM003892.4E-651118IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.7E-652113IPR009057Homeodomain-like
CDDcd000865.00E-752114No hitNo description
PfamPF000463.8E-1353113IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010075Biological Processregulation of meristem growth
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MASSNRHWPS MYRSSLACNF QQPQPQPDMN NGGKSSLMSS RCEENGGRNP EPRPRWNPRP  60
EQIRILEGIF NSGMVNPPRD EIRRIRLQLQ EYGPVGDANV FYWFQNRKSR TKHKLRAAGQ  120
LQPSGSGRSA LQARACAPAP VTPPRNLQLA AAAPVAPPTS SSSSSSDRSS GSSSSKSVTV  180
TPTTAVALAS PAGAAPAAVF RQQGVMPTTA MDLLTPLPSS SAALAARQLY YQYHSQIMAP  240
AAPPMPDTVI ASPEQFLPQW QQGGQQHYYL PATELGGVLD GHSHHTHEPP AAIHRPVSLS  300
PSVLFGLCNE ALRQDYCADI SVVPTKGLGH GHQFWNSTTC GSDMGNSNSK IDAVSAVIRD  360
DEKSRLGLLH YYGLAGATTT AAAAVAPAPL AADAAAGTAT LLPSSAASDQ LQGLLDAAGL  420
LMGETPPTPT ATVVAVARDA VTCAATATAQ FSVPASMRLD VRLAFGEAAL LARHTGEAVP  480
VDESGVTVEP LQQDTLYYVL MATNN
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G409881
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G409881_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4902420.0AM490242.1 Zea mays mRNA for putative wuschel homeobox protein (wox9C gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008650010.10.0WUSCHEL-related homeobox 12-like isoform X1
SwissprotA3B6V01e-125WOX12_ORYSJ; WUSCHEL-related homeobox 12
TrEMBLA0A1D6MCW80.0A0A1D6MCW8_MAIZE; WUSCHEL related homeobox 9c
STRINGGRMZM2G409881_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.13e-33homeobox-3
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  2. Nardmann J,Werr W
    The shoot stem cell niche in angiosperms: expression patterns of WUS orthologues in rice and maize imply major modifications in the course of mono- and dicot evolution.
    Mol. Biol. Evol., 2006. 23(12): p. 2492-504
    [PMID:16987950]
  3. Nardmann J,Zimmermann R,Durantini D,Kranz E,Werr W
    WOX gene phylogeny in Poaceae: a comparative approach addressing leaf and embryo development.
    Mol. Biol. Evol., 2007. 24(11): p. 2474-84
    [PMID:17768306]