PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G409881_P01 | ||||||||
Common Name | wox9C, Zm.37049 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | WOX | ||||||||
Protein Properties | Length: 506aa MW: 53383 Da PI: 7.6116 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 48.2 | 1.9e-15 | 53 | 112 | 2 | 56 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 r+R+++ +eq+++Le F++ +p ++e++++ +l + +++V++WFqNr+ + k GRMZM2G409881_P01 53 RPRWNPRPEQIRILEGIFNSgMVNPPRDEIRRIRLQLqeygPVGDANVFYWFQNRKSRTK 112 89*****************99****************99999****************99 PP | |||||||
2 | Wus_type_Homeobox | 105.8 | 2.8e-34 | 52 | 114 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +r+RW+P+peQi+iLe +++sG+++P+++ei+ri+ +L+eyG ++d+NVfyWFQNrk+R ++k GRMZM2G409881_P01 52 PRPRWNPRPEQIRILEGIFNSGMVNPPRDEIRRIRLQLQEYGPVGDANVFYWFQNRKSRTKHK 114 689**********************************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 9.961 | 49 | 114 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.31E-11 | 50 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.4E-6 | 51 | 118 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.7E-6 | 52 | 113 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.02E-7 | 52 | 114 | No hit | No description |
Pfam | PF00046 | 3.8E-13 | 53 | 113 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0010075 | Biological Process | regulation of meristem growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 506 aa Download sequence Send to blast |
MASSNRHWPS MYRSSLACNF QQPQPQPDMN NGGKSSLMSS RCEENGGRNP EPRPRWNPRP 60 EQIRILEGIF NSGMVNPPRD EIRRIRLQLQ EYGPVGDANV FYWFQNRKSR TKHKLRAAGQ 120 LQPSGSGRSA LQARACAPAP VTPPRNLQLA AAAPVAPPTS SSSSSSDRSS GSSSSKSVTV 180 TPTTAVALAS PAGAAPAAVF RQQGVMPTTA MDLLTPLPSS SAALAARQLY YQYHSQIMAP 240 AAPPMPDTVI ASPEQFLPQW QQGGQQHYYL PATELGGVLD GHSHHTHEPP AAIHRPVSLS 300 PSVLFGLCNE ALRQDYCADI SVVPTKGLGH GHQFWNSTTC GSDMGNSNSK IDAVSAVIRD 360 DEKSRLGLLH YYGLAGATTT AAAAVAPAPL AADAAAGTAT LLPSSAASDQ LQGLLDAAGL 420 LMGETPPTPT ATVVAVARDA VTCAATATAQ FSVPASMRLD VRLAFGEAAL LARHTGEAVP 480 VDESGVTVEP LQQDTLYYVL MQATNN |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G409881 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G409881_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM490242 | 0.0 | AM490242.1 Zea mays mRNA for putative wuschel homeobox protein (wox9C gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001288483.1 | 0.0 | uncharacterized protein LOC103630735 | ||||
Swissprot | A3B6V0 | 1e-125 | WOX12_ORYSJ; WUSCHEL-related homeobox 12 | ||||
TrEMBL | A8Y7W3 | 0.0 | A8Y7W3_MAIZE; Putative wuschel homeobox protein | ||||
STRING | GRMZM2G409881_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2666 | 34 | 70 | Representative plant | OGRP6103 | 12 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33880.1 | 3e-33 | homeobox-3 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G409881_P01 |
Entrez Gene | 103630735 |
Publications ? help Back to Top | |||
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