PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G409627_P01 | ||||||||
Common Name | LOC103629098, LOC103637780, ZEAMMB73_845650, Zm.13736 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | NF-X1 | ||||||||
Protein Properties | Length: 1103aa MW: 118380 Da PI: 8.171 | ||||||||
Description | NF-X1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-NF-X1 | 17.5 | 8.7e-06 | 374 | 391 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H C+ CH+GpC++C GRMZM2G409627_P01 374 CGNHACKDMCHPGPCGEC 391 ****************** PP | |||||||
2 | zf-NF-X1 | 18.9 | 3.3e-06 | 432 | 449 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG H+C+ CHeG+CppC GRMZM2G409627_P01 432 CGVHRCKVNCHEGECPPC 449 ****************** PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57850 | 9.18E-7 | 128 | 202 | No hit | No description |
PROSITE profile | PS50016 | 8.502 | 135 | 198 | IPR019787 | Zinc finger, PHD-finger |
PROSITE pattern | PS01359 | 0 | 138 | 195 | IPR019786 | Zinc finger, PHD-type, conserved site |
PROSITE profile | PS50089 | 8.934 | 138 | 196 | IPR001841 | Zinc finger, RING-type |
CDD | cd06008 | 2.16E-4 | 229 | 293 | No hit | No description |
SMART | SM00438 | 0.023 | 255 | 273 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 8.2 | 257 | 272 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 4.88E-11 | 300 | 348 | No hit | No description |
SMART | SM00438 | 0.01 | 310 | 329 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.17 | 312 | 327 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 2.32E-9 | 364 | 407 | No hit | No description |
SMART | SM00438 | 7.0E-4 | 374 | 393 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.0011 | 374 | 391 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 9.45E-13 | 422 | 470 | No hit | No description |
SMART | SM00438 | 4.2E-4 | 432 | 451 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 5.0E-5 | 432 | 449 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 2.2 | 488 | 499 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.38E-8 | 517 | 569 | No hit | No description |
SMART | SM00438 | 0.0015 | 527 | 546 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 4.1E-4 | 527 | 544 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 7.3 | 584 | 602 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.57 | 637 | 672 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.019 | 637 | 652 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 2.44E-4 | 670 | 721 | No hit | No description |
Pfam | PF01422 | 23 | 674 | 700 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.36 | 681 | 702 | IPR000967 | Zinc finger, NF-X1-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1103 aa Download sequence Send to blast |
MQPSTDRRRG GGPVATASRV WRARPAASSP GSAAGPAAAG PILPLPSSAP EARPPRRRSR 60 RSNHGNNQNH RPAAPQEQND NAGHRRRGPP PERPAPAPPA PAREHAPAPA AVETRGDGAV 120 PQLVQEIQDK LARGAVECMI CYDMVRRSAP IWSCGSCFSI FHLPCIRKWV RSPASAADAS 180 PAADPASLSW RCPGCQSVYA TLARDLAYTC FCGRQRDPPN DHFLTPHSCG EPCSKPLERA 240 EPLCAKGEDV DATRCPHVCV LQCHPGPCPP CKAFAPNRPC PCGKEIIGRR CADRSTPVTC 300 GRPCEQLLPC KRHRCEKVCH TGSCGDCAVP ISARCFCGKK NETLQCGDMM VKGKLSEEDG 360 VFSCNEVCGR TLACGNHACK DMCHPGPCGE CELMPGKVRT CHCGKTRLQE RRASCLDAIP 420 TCDKICDKKL PCGVHRCKVN CHEGECPPCL VLVEQKCRCG SSGQMVECYK VSMEEFRCNK 480 PCGRKKKCGR HRCSELCCPL SRNVAQLEGG NWDPHLCQIP CGKKLRCGQH LCQLLCHSGH 540 CPPCLETIFT DLTCACGRTS LPPPLPCGTP TPSCPHQCSV PQPCGHLASH SCHFGDCSPC 600 IVPVMRECIG GHVMLRNIPC GSKDIRCTQP CGKNRQCGIH ACNRPCHPPP CDQTPANGDA 660 SSSSGGKASC GQVCGAVRRE CKHTCTASCH PSSPCPDLRC EFSVPITCSC GRITATVPCG 720 AGGSSMGDNM FKVSIIQKLP MPLQSVESNG RVPLGQRKLS CDEECAKMEK KRVLAEAFDI 780 TPPNLDALHF GENSSSSDLV SDLFRREPKW VLAIEDRCKF LVLGKVRGSS SSNLKLHVFC 840 PMMKDKRDAI SLIAGRWKLS VQSACREPRC FVTIHVTSKS KPPARILGSK AGVPATAAHP 900 YFDPLVDMDP RLVVAMLDLP RDADVNALVL RFGGECELVW LNDKNAIAVF NDPARAATAL 960 RRLDYGSAYQ GAAMFMPSSA QASSGNVWIG EQKDGGFAAR NNPWKKPASA EPDLPSGDWS 1020 GVAGHAPAPG WRGVNTASQV MGTTNRWNVL ESDAAASSGS GNERKPAPGT DVHSTVSNTG 1080 NAGPSVTKLQ PDVEVDDWEE ACE |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Zm.13736 | 0.0 | endosperm| meristem| pedicel| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G409627 |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, buds, flowers and siliques. {ECO:0000269|PubMed:16905136}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Mediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G409627_P01 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008648524.1 | 0.0 | NF-X1-type zinc finger protein NFXL1 | ||||
Swissprot | Q9SY59 | 0.0 | NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1 | ||||
TrEMBL | A0A1D6NQZ5 | 0.0 | A0A1D6NQZ5_MAIZE; NF-X1-type zinc finger protein NFXL1 | ||||
STRING | GRMZM2G307823_P01 | 0.0 | (Zea mays) | ||||
STRING | GRMZM2G409627_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6130 | 35 | 43 | Representative plant | OGRP3950 | 14 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G10170.1 | 0.0 | NF-X-like 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G409627_P01 |
Entrez Gene | 103629098 | 103637780 |