PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G409627_P01
Common NameLOC103629098, LOC103637780, ZEAMMB73_845650, Zm.13736
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NF-X1
Protein Properties Length: 1103aa    MW: 118380 Da    PI: 8.171
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G409627_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X117.58.7e-06374391118
           zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                        CG+H C+  CH+GpC++C
  GRMZM2G409627_P01 374 CGNHACKDMCHPGPCGEC 391
                        ****************** PP

2zf-NF-X118.93.3e-06432449118
           zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                        CG H+C+  CHeG+CppC
  GRMZM2G409627_P01 432 CGVHRCKVNCHEGECPPC 449
                        ****************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578509.18E-7128202No hitNo description
PROSITE profilePS500168.502135198IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590138195IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500898.934138196IPR001841Zinc finger, RING-type
CDDcd060082.16E-4229293No hitNo description
SMARTSM004380.023255273IPR000967Zinc finger, NF-X1-type
PfamPF014228.2257272IPR000967Zinc finger, NF-X1-type
CDDcd060084.88E-11300348No hitNo description
SMARTSM004380.01310329IPR000967Zinc finger, NF-X1-type
PfamPF014220.17312327IPR000967Zinc finger, NF-X1-type
CDDcd060082.32E-9364407No hitNo description
SMARTSM004387.0E-4374393IPR000967Zinc finger, NF-X1-type
PfamPF014220.0011374391IPR000967Zinc finger, NF-X1-type
CDDcd060089.45E-13422470No hitNo description
SMARTSM004384.2E-4432451IPR000967Zinc finger, NF-X1-type
PfamPF014225.0E-5432449IPR000967Zinc finger, NF-X1-type
PfamPF014222.2488499IPR000967Zinc finger, NF-X1-type
CDDcd060081.38E-8517569No hitNo description
SMARTSM004380.0015527546IPR000967Zinc finger, NF-X1-type
PfamPF014224.1E-4527544IPR000967Zinc finger, NF-X1-type
SMARTSM004387.3584602IPR000967Zinc finger, NF-X1-type
SMARTSM004380.57637672IPR000967Zinc finger, NF-X1-type
PfamPF014220.019637652IPR000967Zinc finger, NF-X1-type
CDDcd060082.44E-4670721No hitNo description
PfamPF0142223674700IPR000967Zinc finger, NF-X1-type
SMARTSM004380.36681702IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1103 aa     Download sequence    Send to blast
MQPSTDRRRG GGPVATASRV WRARPAASSP GSAAGPAAAG PILPLPSSAP EARPPRRRSR  60
RSNHGNNQNH RPAAPQEQND NAGHRRRGPP PERPAPAPPA PAREHAPAPA AVETRGDGAV  120
PQLVQEIQDK LARGAVECMI CYDMVRRSAP IWSCGSCFSI FHLPCIRKWV RSPASAADAS  180
PAADPASLSW RCPGCQSVYA TLARDLAYTC FCGRQRDPPN DHFLTPHSCG EPCSKPLERA  240
EPLCAKGEDV DATRCPHVCV LQCHPGPCPP CKAFAPNRPC PCGKEIIGRR CADRSTPVTC  300
GRPCEQLLPC KRHRCEKVCH TGSCGDCAVP ISARCFCGKK NETLQCGDMM VKGKLSEEDG  360
VFSCNEVCGR TLACGNHACK DMCHPGPCGE CELMPGKVRT CHCGKTRLQE RRASCLDAIP  420
TCDKICDKKL PCGVHRCKVN CHEGECPPCL VLVEQKCRCG SSGQMVECYK VSMEEFRCNK  480
PCGRKKKCGR HRCSELCCPL SRNVAQLEGG NWDPHLCQIP CGKKLRCGQH LCQLLCHSGH  540
CPPCLETIFT DLTCACGRTS LPPPLPCGTP TPSCPHQCSV PQPCGHLASH SCHFGDCSPC  600
IVPVMRECIG GHVMLRNIPC GSKDIRCTQP CGKNRQCGIH ACNRPCHPPP CDQTPANGDA  660
SSSSGGKASC GQVCGAVRRE CKHTCTASCH PSSPCPDLRC EFSVPITCSC GRITATVPCG  720
AGGSSMGDNM FKVSIIQKLP MPLQSVESNG RVPLGQRKLS CDEECAKMEK KRVLAEAFDI  780
TPPNLDALHF GENSSSSDLV SDLFRREPKW VLAIEDRCKF LVLGKVRGSS SSNLKLHVFC  840
PMMKDKRDAI SLIAGRWKLS VQSACREPRC FVTIHVTSKS KPPARILGSK AGVPATAAHP  900
YFDPLVDMDP RLVVAMLDLP RDADVNALVL RFGGECELVW LNDKNAIAVF NDPARAATAL  960
RRLDYGSAYQ GAAMFMPSSA QASSGNVWIG EQKDGGFAAR NNPWKKPASA EPDLPSGDWS  1020
GVAGHAPAPG WRGVNTASQV MGTTNRWNVL ESDAAASSGS GNERKPAPGT DVHSTVSNTG  1080
NAGPSVTKLQ PDVEVDDWEE ACE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.137360.0endosperm| meristem| pedicel| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G409627
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, buds, flowers and siliques. {ECO:0000269|PubMed:16905136}.
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G409627_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008648524.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A1D6NQZ50.0A0A1D6NQZ5_MAIZE; NF-X1-type zinc finger protein NFXL1
STRINGGRMZM2G307823_P010.0(Zea mays)
STRINGGRMZM2G409627_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61303543
Representative plantOGRP39501420
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1