PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G408436_P01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C2H2 | ||||||||
Protein Properties | Length: 302aa MW: 31423.5 Da PI: 7.2765 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.7 | 0.00081 | 200 | 222 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg +F + + L H+r+H GRMZM2G408436_P01 200 HRCGTCGAVFLTGYKLGGHMRKH 222 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 1.2E-5 | 158 | 181 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.35E-6 | 158 | 222 | No hit | No description |
PROSITE profile | PS50157 | 8.663 | 158 | 185 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.091 | 158 | 180 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 160 | 180 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 7.3E-6 | 200 | 223 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.12 | 200 | 228 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.67 | 200 | 222 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 202 | 222 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MAGSSEDGRR RSVADLRDAA IARRWGGCKQ AASSSSSAQS VQSMAIVVAN PEIVLQPTPL 60 PTIVTPNPSS PVHMEPATPS PSSVPIASTM TNVSNESSSG FAKPMHNDAT ETDNPPTEAV 120 THLDAVPALP SPPPAEVHAA TSSVPPPPLP GPQNPNGYTC KLCSACFPTH QGLGGHMAAH 180 KTRELAAVPC LRDAKPVKEH RCGTCGAVFL TGYKLGGHMR KHYTGPKIVP KKKPRLDDVV 240 TLQLLSPRTV EPASRSPVPG RVLLFGVDIG AEAWMPAAVQ GEEEGSSTTA GQAPSEPTDG 300 EQ |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G408436 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G408436_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1D6NGZ6 | 0.0 | A0A1D6NGZ6_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G408436_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7612 | 11 | 36 | Representative plant | OGRP10122 | 3 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53600.1 | 3e-13 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G408436_P01 |