PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G407119_P02 | ||||||||
Common Name | ZEAMMB73_862760, Zm.125620 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 239aa MW: 26951.7 Da PI: 8.6411 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.3 | 2e-11 | 163 | 211 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L++l+P + +k Ka++L + ++Y++sLq GRMZM2G407119_P02 163 NSHSLAERFRREKINVRMKLLQDLVPGC----NKITGKAMMLDEIINYVQSLQ 211 58**************************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.91E-9 | 158 | 215 | No hit | No description |
SuperFamily | SSF47459 | 4.19E-17 | 158 | 225 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.3E-17 | 160 | 224 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.256 | 160 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.7E-9 | 163 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-9 | 166 | 216 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MMYSPPRTDP DREDEQCFAI GANLLSSLDH TMKFDEPIAF PMNNVGMQER VQLYNSTGDA 60 QLSRNANTGK CSKGGKRKSS GGINSSLHSL VRKLEATVAL FHRLHHTSLP LFHPTVHINV 120 LLQDEARALL QREVSMECAD ENAAGAKRED YAHVRAKRGQ ATNSHSLAER FRREKINVRM 180 KLLQDLVPGC NKITGKAMML DEIINYVQSL QRQVEFLSMK LSAIRPGFNR DLELQDDHP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.125620 | 0.0 | meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G407119 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G407119_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU974082 | 0.0 | EU974082.1 Zea mays clone 439268 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008660368.1 | 1e-143 | transcription factor bHLH74 | ||||
TrEMBL | A0A3L6DCZ0 | 1e-170 | A0A3L6DCZ0_MAIZE; Transcription factor bHLH62 | ||||
STRING | GRMZM2G407119_P01 | 1e-176 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07340.1 | 2e-42 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G407119_P02 |