PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G406651_P02 | ||||||||
Common Name | FAR1.14, Zm.25672 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | FAR1 | ||||||||
Protein Properties | Length: 855aa MW: 94584.7 Da PI: 7.405 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 66.8 | 5.6e-21 | 74 | 178 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...............tekerrtraetrtgCkaklkvkkek.dgkw 76 +fY++YA ++GF vrks+++k++r++ +t+r fvCsk+g+r+e kk + + + +rtgC a+l++k+ + + GRMZM2G406651_P02 74 EFYKAYAARLGFVVRKSNKSKNSRHT-VTRRLFVCSKQGFRQEPKKPqdetagsgvasspslSLVPAPRCPDSRTGCLASLTIKLIPsANAF 164 6*****************99997666.****************99997888888777666553444448899**************9999** PP FAR1 77 evtkleleHnHela 90 +vt+++ +HnH+la GRMZM2G406651_P02 165 RVTDFVADHNHPLA 178 ************97 PP | |||||||
2 | FAR1 | 69.1 | 1.1e-21 | 226 | 325 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevtk 80 fYn+YA++vGFsvr+s++k++ g i++r fvCs+eg ++++k++ + + r + trtgC+a++++k + +++v+k GRMZM2G406651_P02 226 FYNRYAEHVGFSVRRSYKKRK--RGMIVSRIFVCSREGVSDRTKQEggaivianggagsAGTPRPGPPPTRTGCQARMVIKITPCRTYRVAK 315 9*************9976665..899****************9999**********9977777778899*********************** PP FAR1 81 leleHnHela 90 + eHnH+la GRMZM2G406651_P02 316 FFPEHNHPLA 325 ********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.1E-18 | 74 | 178 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 1.1E-18 | 226 | 325 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 8.4E-23 | 414 | 508 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.089 | 682 | 729 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 2.8E-5 | 699 | 728 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 7.1E-6 | 704 | 731 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 855 aa Download sequence Send to blast |
MSTAGDPSRL SGESSPSSST SSGSSSHSSG AADAAATNLA LTAPTSALAD DTDADAPTSP 60 RVGTYFETED DAYEFYKAYA ARLGFVVRKS NKSKNSRHTV TRRLFVCSKQ GFRQEPKKPQ 120 DETAGSGVAS SPSLSLVPAP RCPDSRTGCL ASLTIKLIPS ANAFRVTDFV ADHNHPLASS 180 SPAVSLALLS PSSSHHSIVA VASLPDPRDG PRADMHFETE EDAYVFYNRY AEHVGFSVRR 240 SYKKRKRGMI VSRIFVCSRE GVSDRTKQEG GAIVIANGGA GSAGTPRPGP PPTRTGCQAR 300 MVIKITPCRT YRVAKFFPEH NHPLANPDSV HKLRSHKMRA RAHELGAGEM HRRKQGKGVQ 360 LGDVGAALQY LEELQVENPS VYYAVGVGPD GKSAVNFFWA DAKSIIDYRS FGDVVCFDTT 420 YALNIYGRPF ALFVGVDNHK QLLVFGAALL YDESIQSLKW VFEVFADAMH ARHPQTILID 480 ERPECAIAAA EVWPGTNHCT GVWHIYHNSK RHLKQVFESS KSFSNALNHC LFECEDEIEF 540 LSAWEKLVEK HDIGESEWLS RLYLEKEKWA LPYQRTMFSA DILSTLRKDN MINELRRDLS 600 EQEDILQFFR RYESILEEHR SKKLHADVDG SQVTLPIPSL RMLKQSSNAY TPEAFKMFQG 660 EFEAYMNCMS FPCGVVGTIS EYKIVLDEKP SESFVKFDAL DGSTTCSCKK FEAVGIQCCH 720 VLKVLDLKNI KELPEQYILK RWRKDARSVQ IGEEPTYGSG SVMRSTSEAR FSNMCRLASL 780 IASRAAKSED VMSYIESQSN AIQKHLDDIL HTSYPDMGNH TVASSSQAIS FVGTQHPDHS 840 TPVVVAQTTN GLMGL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.25672 | 0.0 | cell culture| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G406651 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G406651_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU949364 | 0.0 | EU949364.1 Zea mays clone 403232 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008653099.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A096TM77 | 0.0 | A0A096TM77_MAIZE; Protein FAR1-RELATED SEQUENCE 5 | ||||
STRING | GRMZM2G406651_P01 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 6e-87 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G406651_P02 |
Entrez Gene | 103633192 |