PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G406651_P02
Common NameFAR1.14, Zm.25672
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family FAR1
Protein Properties Length: 855aa    MW: 94584.7 Da    PI: 7.405
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G406651_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.85.6e-2174178190
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...............tekerrtraetrtgCkaklkvkkek.dgkw 76 
                        +fY++YA ++GF vrks+++k++r++ +t+r fvCsk+g+r+e kk                +     + + +rtgC a+l++k+    + +
  GRMZM2G406651_P02  74 EFYKAYAARLGFVVRKSNKSKNSRHT-VTRRLFVCSKQGFRQEPKKPqdetagsgvasspslSLVPAPRCPDSRTGCLASLTIKLIPsANAF 164
                        6*****************99997666.****************99997888888777666553444448899**************9999** PP

               FAR1  77 evtkleleHnHela 90 
                        +vt+++ +HnH+la
  GRMZM2G406651_P02 165 RVTDFVADHNHPLA 178
                        ************97 PP

2FAR169.11.1e-21226325290
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevtk 80 
                        fYn+YA++vGFsvr+s++k++   g i++r fvCs+eg ++++k++             + + r   + trtgC+a++++k +   +++v+k
  GRMZM2G406651_P02 226 FYNRYAEHVGFSVRRSYKKRK--RGMIVSRIFVCSREGVSDRTKQEggaivianggagsAGTPRPGPPPTRTGCQARMVIKITPCRTYRVAK 315
                        9*************9976665..899****************9999**********9977777778899*********************** PP

               FAR1  81 leleHnHela 90 
                        +  eHnH+la
  GRMZM2G406651_P02 316 FFPEHNHPLA 325
                        ********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.1E-1874178IPR004330FAR1 DNA binding domain
PfamPF031011.1E-18226325IPR004330FAR1 DNA binding domain
PfamPF105518.4E-23414508IPR018289MULE transposase domain
PROSITE profilePS5096610.089682729IPR007527Zinc finger, SWIM-type
PfamPF044342.8E-5699728IPR007527Zinc finger, SWIM-type
SMARTSM005757.1E-6704731IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 855 aa     Download sequence    Send to blast
MSTAGDPSRL SGESSPSSST SSGSSSHSSG AADAAATNLA LTAPTSALAD DTDADAPTSP  60
RVGTYFETED DAYEFYKAYA ARLGFVVRKS NKSKNSRHTV TRRLFVCSKQ GFRQEPKKPQ  120
DETAGSGVAS SPSLSLVPAP RCPDSRTGCL ASLTIKLIPS ANAFRVTDFV ADHNHPLASS  180
SPAVSLALLS PSSSHHSIVA VASLPDPRDG PRADMHFETE EDAYVFYNRY AEHVGFSVRR  240
SYKKRKRGMI VSRIFVCSRE GVSDRTKQEG GAIVIANGGA GSAGTPRPGP PPTRTGCQAR  300
MVIKITPCRT YRVAKFFPEH NHPLANPDSV HKLRSHKMRA RAHELGAGEM HRRKQGKGVQ  360
LGDVGAALQY LEELQVENPS VYYAVGVGPD GKSAVNFFWA DAKSIIDYRS FGDVVCFDTT  420
YALNIYGRPF ALFVGVDNHK QLLVFGAALL YDESIQSLKW VFEVFADAMH ARHPQTILID  480
ERPECAIAAA EVWPGTNHCT GVWHIYHNSK RHLKQVFESS KSFSNALNHC LFECEDEIEF  540
LSAWEKLVEK HDIGESEWLS RLYLEKEKWA LPYQRTMFSA DILSTLRKDN MINELRRDLS  600
EQEDILQFFR RYESILEEHR SKKLHADVDG SQVTLPIPSL RMLKQSSNAY TPEAFKMFQG  660
EFEAYMNCMS FPCGVVGTIS EYKIVLDEKP SESFVKFDAL DGSTTCSCKK FEAVGIQCCH  720
VLKVLDLKNI KELPEQYILK RWRKDARSVQ IGEEPTYGSG SVMRSTSEAR FSNMCRLASL  780
IASRAAKSED VMSYIESQSN AIQKHLDDIL HTSYPDMGNH TVASSSQAIS FVGTQHPDHS  840
TPVVVAQTTN GLMGL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.256720.0cell culture| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G406651
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G406651_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9493640.0EU949364.1 Zea mays clone 403232 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008653099.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A096TM770.0A0A096TM77_MAIZE; Protein FAR1-RELATED SEQUENCE 5
STRINGGRMZM2G406651_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-87FAR1-related sequence 5