PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G405699_P02 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | B3 | ||||||||
Protein Properties | Length: 313aa MW: 34077.9 Da PI: 6.3879 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37.1 | 5.7e-12 | 233 | 313 | 3 | 79 |
EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDf 79 k+lt+sdv +sgr+vlpkk ae+ +++ + l++ d W++k+++ ++ks++y+l+ eFvk +gL++gD+ GRMZM2G405699_P02 233 KELTKSDVANSGRIVLPKKDAEAGlpPLVQGDPLILQMDDmVLPIIWKFKYRFwpNNKSRMYILE-AAGEFVKTHGLQAGDT 313 899******************88899666666656676664445*******99888888888888.99*************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.8E-17 | 230 | 313 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.1E-13 | 230 | 313 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.75E-16 | 230 | 313 | No hit | No description |
PROSITE profile | PS50863 | 8.698 | 231 | 313 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-8 | 233 | 313 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MGQMGGPDGD GPHHQYHYQA LLAAVQNPSQ GLHVPLHAGA GAPAAGPGPR PGADADASST 60 HNANATPHSQ PPRAFTDWSA SNSAFAAQPA PATTNTPFHY NLSQSYALWT HYMLNKNVSY 120 STYSTPHEPL RHTHIPDKYS GCAFSLGFDS FTTMSLGPNI CANMTPMERS ISAKEPENSE 180 DLPTVVRSSD EMDTRNSGDV RRDTVDTLPE SKQSHESCAS KFDSGEYQVI LRKELTKSDV 240 ANSGRIVLPK KDAEAGLPPL VQGDPLILQM DDMVLPIIWK FKYRFWPNNK SRMYILEAAG 300 EFVKTHGLQA GDT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9c_A | 7e-29 | 220 | 312 | 2 | 94 | B3 domain-containing transcription factor LEC2 |
6j9c_D | 7e-29 | 220 | 312 | 2 | 94 | B3 domain-containing transcription factor LEC2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.98484 | 0.0 | ovary| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G405699 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:18025467}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator involved in iron deficiency response and tolerance. May regulate directly iron transporters or other transcription factors involved in iron-deficiency response. Binds specifically to the DNA sequence 5'-CATGC-3' of the IDE1 element found in the promoter of the barley iron deficiency-inducible gene IDS2. {ECO:0000269|PubMed:18025467}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G405699_P02 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated during the early stage of iron deficiency (at protein level). {ECO:0000269|PubMed:27137867}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU971515 | 0.0 | EU971515.1 Zea mays clone 366455 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020395341.1 | 0.0 | B3 domain-containing protein IDEF1 isoform X2 | ||||
Swissprot | Q6Z1Z3 | 1e-100 | IDEF1_ORYSJ; B3 domain-containing protein IDEF1 | ||||
TrEMBL | A0A3L6E751 | 0.0 | A0A3L6E751_MAIZE; B3 domain-containing protein IDEF1 | ||||
STRING | GRMZM2G405699_P01 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28300.1 | 2e-28 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G405699_P02 |