PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G405170_P01 | ||||||||
Common Name | LOC103642409, ZEAMMB73_809379 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | B3 | ||||||||
Protein Properties | Length: 224aa MW: 25264.9 Da PI: 9.9695 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 78.1 | 9.2e-25 | 28 | 125 | 1 | 94 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+kv tpsdv+k++rlv+pk+fae+h +++ l + d + g+ W+++++y+ +s++yv+tkGW+++v++++L ++D+v F + GRMZM2G405170_P01 28 FEKVVTPSDVGKLNRLVVPKQFAERHlplrgAAARSRGTVLCFHDdaRGGEAWRFRYSYWSSSQSYVITKGWSRYVRDKRLATRDIVAFCR- 118 99***************************983344466778888866677***************************************94. PP SSSEE..EE CS B3 86 grsefelvv 94 ++++l++ GRMZM2G405170_P01 119 --DGARLFI 125 ..4455555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-33 | 20 | 135 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.14E-26 | 24 | 132 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.46E-19 | 26 | 121 | No hit | No description |
Pfam | PF02362 | 4.9E-22 | 28 | 127 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-14 | 28 | 133 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.534 | 28 | 131 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MALTTLALEL ESAAGDYSHS HSRRERMFEK VVTPSDVGKL NRLVVPKQFA ERHLPLRGAA 60 ARSRGTVLCF HDDARGGEAW RFRYSYWSSS QSYVITKGWS RYVRDKRLAT RDIVAFCRDG 120 ARLFIDCQRR RRTTTRRSGS EGAVVLPAPA IGAAVPPMCQ LQMTVVFPDG QHQQAAVAMK 180 KETAAAQEED DKEAQRRCGR CLRLFGVNLL DELRTEPLLL DLQL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 6e-39 | 24 | 130 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 6e-39 | 24 | 130 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G405170 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G405170_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ726965 | 0.0 | KJ726965.1 Zea mays clone pUT3665 ABI3VP1 transcription factor (ABI37) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008663910.2 | 1e-165 | B3 domain-containing protein Os06g0107800 | ||||
Swissprot | Q5VS55 | 3e-45 | Y6078_ORYSJ; B3 domain-containing protein Os06g0107800 | ||||
TrEMBL | A0A3L6DGM4 | 1e-164 | A0A3L6DGM4_MAIZE; B3 domain-containing protein | ||||
TrEMBL | K7UE08 | 1e-164 | K7UE08_MAIZE; B3 domain-containing transcription factor NGA2 | ||||
STRING | GRMZM2G405170_P01 | 1e-165 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12947 | 29 | 34 | Representative plant | OGRP15589 | 2 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61970.1 | 9e-40 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G405170_P01 |
Entrez Gene | 103642409 |