PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G402027_P01
Common NameZEAMMB73_888616
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 803aa    MW: 85708.5 Da    PI: 6.7179
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G402027_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79.2e-05110127219
                        EETTTTEEESSHHHHHHH CS
            zf-C2H2   2 kCpdCgksFsrksnLkrH 19 
                        +C++Cgk F++++++ +H
  GRMZM2G402027_P01 110 VCKNCGKEFTSWDLFLQH 127
                        7****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.962951IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.07E-52951No hitNo description
PROSITE profilePS501579.642956IPR007087Zinc finger, C2H2
PfamPF139120.0033051IPR007087Zinc finger, C2H2
PROSITE patternPS0002803151IPR007087Zinc finger, C2H2
SuperFamilySSF576671.07E-5104128No hitNo description
SMARTSM00355240109129IPR015880Zinc finger, C2H2-like
PfamPF139122.0E-9294319IPR007087Zinc finger, C2H2
SuperFamilySSF576679.24E-8294317No hitNo description
SMARTSM003550.13295317IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.221295322IPR007087Zinc finger, C2H2
PROSITE patternPS000280297317IPR007087Zinc finger, C2H2
SuperFamilySSF576679.24E-8415442No hitNo description
PfamPF139127.1E-11420443IPR007087Zinc finger, C2H2
SMARTSM003553.7420442IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.182420442IPR007087Zinc finger, C2H2
PROSITE patternPS000280422442IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 803 aa     Download sequence    Send to blast
MCESPSSSMS PSPSPSPPQP SRPPPEYKHF CRVCNKGFTC GSALGGHMRA HGASDVDGFG  60
VDDDDSLDEE PTAPARCTGA DQWDVAGTSS ATHAYALRAN PNRLIRSCQV CKNCGKEFTS  120
WDLFLQHGKC NSSEGGEGEE GEMDGSDSLR SSLPASEAGG GGEEDPAVAA AAWSKGKRSR  180
RVVRTDDPSS TMVSAERCTS GDEDEELANF LVMLSSSKSN NNDDQTIVIT ADHHKEPVCA  240
STGEGGGGGE PLPFQSQTIS LFTQTQTQEP VVPLLPSTVA ATVSQYIAPI SRGVFECKAC  300
KKVFTSHQAL GGHRASHKKV KGCFAARFDN NATETAINNP TIAADTNSKA VVVNNADASV  360
DAATRVFAIT SVDTDVGTSN EATSSSLSMA HAVPIRHNPA SATTTTFTVA AHCKKNVKMH  420
ECSVCHRLFT SGQALGGHKR CHWLTSNTSD PCNPLAIPPL TEDLVVGEVK HHDDTLQPTV  480
DATEPLLDLT IAANPAVALA ASTMRPDIAS TVHLKQLVVA APSNNVSHRK KTAATGSHTT  540
DAVVEEDEAD SIIIKKAKIS DLKDVVNMDG KAATRPLQPH AQATVKHPQA TVKRNLCLLL  600
ICPKVLQVLV GGGTSASGTP CTAASSVASW PDSSYSTHSD KVQGSGSMPA TLPPLIHIFQ  660
VIVLLFCRPS TRTKILLENH IVDSEISLTA TVILVGADVH RDAREGVLEF ERAFRERFSA  720
YTLAAKRHID STTIFDVQGV IYVVFALRIY CLSYICLLFC ITTSLANLYD MRPRSCHFAY  780
ACFNSSQGLT WIILERKQTL RSR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.226228e-43meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G402027
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G402027_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020401721.10.0uncharacterized protein LOC103641998 isoform X2
TrEMBLA0A1D6JD570.0A0A1D6JD57_MAIZE; C2H2-type zinc finger family protein
STRINGGRMZM2G402027_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35243262
Representative plantOGRP2521820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.16e-16C2H2-like zinc finger protein