PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G401835_P01
Common NameZm.23013
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family G2-like
Protein Properties Length: 378aa    MW: 40939.6 Da    PI: 8.7572
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G401835_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.62.5e-27120173155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        kpr++W  +LH++Fveav+q+ G++kA+Pk+ile+m+v+g+t+e+v+SHLQkYR+
  GRMZM2G401835_P01 120 KPRVQWCGQLHRKFVEAVHQI-GIDKAVPKKILEAMNVEGITRENVASHLQKYRI 173
                        79*******************.********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011013.486154IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23001.2E-91578No hitNo description
SuperFamilySSF521722.7E-71558IPR011006CheY-like superfamily
Gene3DG3DSA:1.10.10.603.1E-28117177IPR009057Homeodomain-like
SuperFamilySSF466892.15E-18118177IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-24120173IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MTKGANDYKN STAGVLSANS ETRTIMKGIK HGACDYIVKP VRLEQLRGIW THVVKNSRTD  60
PRTSIIDSGS DDDVQKLPSG DGGEGDKVGA NRRKKKCSKK NKPAVDVAGG HSENTSAQKK  120
PRVQWCGQLH RKFVEAVHQI GIDKAVPKKI LEAMNVEGIT RENVASHLQK YRIYLRKLIE  180
GTLGNSNSFA DETEALWRYL NVPSFITSPS SSNHFTNAGS SSAIRTQTLL PPQPPVHVMS  240
SQKNLSTPRS YASILRGKIL GSSRGIPFED TPDGEMLAPG NLSSQSPELQ SVWAGSASTR  300
SDLQIDNSTQ ALNGGGASDN SLREGGSTVD QQAVVSDQVN NINAESDGLD DFLAYMVNRR  360
DFINNGDSFI LGDQDFAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-22116178163ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.230132e-97pericarp
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G401835
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G401835_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008649062.10.0two-component response regulator ORR24
TrEMBLA0A3L6EC590.0A0A3L6EC59_MAIZE; Two-component response regulator ORR24
STRINGGRMZM2G401835_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11571753
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.17e-44response regulator 2