PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G401809_P02
Common NameLOC103647841
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 426aa    MW: 47224.4 Da    PI: 6.5253
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G401809_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.42.2e-10171234147
                        TSSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT......TTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...........tWktIartmg......kgRtlkqcksrwqky 47 
                        r+ WT+e++e+lv+a  ++ ++            W  Ia+t +       +Rt+kq+k++w +y
  GRMZM2G401809_P02 171 RLEWTKEDEEKLVNAWFMHSNDpisgnnksgssFWGQIAATYNstsdpiRHRTAKQLKDHWVTY 234
                        789**********************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.027166235IPR017877Myb-like domain
SMARTSM007172.5E-5170237IPR001005SANT/Myb domain
SuperFamilySSF466891.33E-6170249IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.7E-7170234IPR009057Homeodomain-like
PfamPF002491.4E-6171234IPR001005SANT/Myb domain
CDDcd001671.69E-4173234No hitNo description
PfamPF143035.0E-6262352IPR029466No apical meristem-associated, C-terminal domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MSGWSPDLNT FTDLLQSDGS PTTLPLDESS SLHRRSDVSA SLPRALFPAA RPPPYPYPYH  60
LYQYPPSSYG QPPTSQAGIQ ASFPVRPYAP PPPAADGSQA SFQIPPYAPP SYAPPPYGVP  120
PYAPYAPPPY GAPHPYAPPT YGAPPPVAPL SVGSENQAEE NPVPKEKRPK RLEWTKEDEE  180
KLVNAWFMHS NDPISGNNKS GSSFWGQIAA TYNSTSDPIR HRTAKQLKDH WVTYNRLRQS  240
GADDAMVMDA AMARFEGKMG HPFKRHHWWQ VVRHEPKWSA KHGLGSGSDS TANKRTRLGV  300
SGEYSSGGTE DTEEEVPRPV GRDRAKAAAR KTKTKGKGKE ATSSESTSEA FKMKNLWGGL  360
VKAKLLKQWN ILKGRSTRDM DPAERRTHGR AVKMVEKELG LLDDEEEEPE AEREEEEDED  420
EIEESD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1037880.0endosperm| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G401809
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G401809_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5176001e-165EF517600.2 Zea mays clone BACs ZMMBBb0345O22, ZMMBBc0294D02, ZMMBBb0103L15, ZMMBBb0622H01, and ZMMBBb0335C07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008662552.10.0ribonuclease 3
TrEMBLA0A3L6EIR90.0A0A3L6EIR9_MAIZE; Glutathione S-transferase T3
TrEMBLK7UAL20.0K7UAL2_MAIZE; Putative MYB DNA-binding domain superfamily protein
STRINGGRMZM2G401809_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3263337